PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 485126
Common NameARALYDRAFT_485126
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 468aa    MW: 50000.3 Da    PI: 7.4755
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
485126genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP135.25.6e-421052792134
     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............... 88 
             + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++  + s +ss+s+ s +               
  485126 105 PLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSMSLPshfrsaastfspnnm 207
             57999***********************************************************888887776555666666633333445555666666666 PP

     TCP  89 ........................kaaksaa.kskksqksaasalnlakesrakararare.rtrekmrikn 134
                                     +a +s+  ++ ++ ++++s+ln+++ ++++ +++++e ++++k r+++
  485126 208 fspamlqqqqqrggggfhhphlqgRATTSSLfPGIDNFTPTTSFLNFHNPTKQEGDQDSEElNSEKKRRLQT 279
             66777777777778889999999988888888********************99999999977777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.3E-41110288IPR005333Transcription factor, TCP
PROSITE profilePS5136927.505111165IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDGGDSVGGG GGGGDDHHRH LHHHHRPTFP FQLLGKHDPD DNHQQQQQPS PSSSSSLFSL  60
HQHQQLSQSQ PQPQSQQKPQ PQTTQKELLQ TQEESAAVVA AKKPPLKRAS TKDRHTKVDG  120
RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLQQAEP SVIAATGTGT IPANFTSLNI  180
SLRSSGSSMS LPSHFRSAAS TFSPNNMFSP AMLQQQQQRG GGGFHHPHLQ GRATTSSLFP  240
GIDNFTPTTS FLNFHNPTKQ EGDQDSEELN SEKKRRLQTT SDLHQQHQHD QIGGYTLQSS  300
NSGSTATAAQ QIPGNFWMVA AGGGGNNNQT GGLMTASIGT GGGGSGGGEP VWTFPSINTA  360
AAALYRSGVS GVSGGAVSSG LHFMNFAAPM AFLMGQQQLA TTSNHEINED NNNNEGGRSD  420
GGGDHHNTQR HHHHHQQQHH HNILSGINQY GRQVSGESQA SGSLGGGD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415422GGRSDGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap485126
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329550.0AL132955.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2.
GenBankAY0588740.0AY058874.1 Arabidopsis thaliana AT3g47620/F1P2_170 mRNA, complete cds.
GenBankAY1033040.0AY103304.1 Arabidopsis thaliana AT3g47620/F1P2_170 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881278.10.0transcription factor TCP14
SwissprotQ93Z000.0TCP14_ARATH; Transcription factor TCP14
TrEMBLD7LRD90.0D7LRD9_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.5__1118__AT3G47620.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39152757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.11e-144TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]