PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 484989
Common NameARALYDRAFT_484989
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 169aa    MW: 18414.4 Da    PI: 9.7418
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
484989genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000287109123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++Cp+Cg  F+    L  H+r+H
   484989  87 HPCPICGVEFPMGQALGGHMRRH 109
              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.6E-123863IPR007087Zinc finger, C2H2
SMARTSM0035513961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9953961IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SuperFamilySSF576671.26E-586113No hitNo description
PROSITE profilePS5015710.49287114IPR007087Zinc finger, C2H2
SMARTSM003550.07987109IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-1187110IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MVARSEVIEI VEDTAAKCLM LLSRVGECGG YGGGEKRVFR CKTCLKEFSS FQALGGHRAS  60
HKKLINSHDI SLLGSLSNKK TKTMTSHPCP ICGVEFPMGQ ALGGHMRRHR NEKGSGTLVT  120
RSFLPETTTT VTTLKKWSSG KRVACLDLDL DSMESLVNWK LELGRTIS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap484989
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3557750.0AL355775.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankHQ6983080.0HQ698308.1 Arabidopsis thaliana ecotype Landsberg erecta chromosome 3 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020881448.11e-121zinc finger protein ZAT8
SwissprotQ9LX851e-102ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLD7LMV21e-119D7LMV2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__981__AT3G46090.11e-120(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.19e-92C2H2 family protein