PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 484718
Common NameARALYDRAFT_484718
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 272aa    MW: 31027.5 Da    PI: 7.4214
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
484718genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.54.2e-202976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll+++v+ +G g+W+t+a++ g++R++k+c++rw +yl
           484718 29 KGPWTLEEDKLLAEYVTSHGEGRWSTVAKCAGLKRSGKSCRLRWVNYL 76
                     79********************************************97 PP
2Myb_DNA-binding506.9e-1682126147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++
           484718  82 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 126
                      7888******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.462476IPR017930Myb domain
SuperFamilySSF466892.46E-3126123IPR009057Homeodomain-like
SMARTSM007171.0E-152878IPR001005SANT/Myb domain
PfamPF002498.4E-182976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-233083IPR009057Homeodomain-like
CDDcd001673.54E-123176No hitNo description
PROSITE profilePS5129424.15977131IPR017930Myb domain
SMARTSM007171.8E-1381129IPR001005SANT/Myb domain
PfamPF002499.9E-1482126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-2484130IPR009057Homeodomain-like
CDDcd001675.81E-1086126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MLDWGVQGHH QKHDHDLYQQ QHQQQGCRKG PWTLEEDKLL AEYVTSHGEG RWSTVAKCAG  60
LKRSGKSCRL RWVNYLRPGL KRGQITPQEE GIILELHSLW GNKWSTIARY LPGRTDNEIK  120
NYWRTHYKKK EKISSKQDKV KRSLSRKQQM DLKPQQQNHQ SQLVPQDHMN IDNDQNIESA  180
LYYPASVFDD QFSMPQIVAT TSSDHSMIDE GHLWGSLWNL DDDDPHGFGG GSGQRTAENI  240
AEKFPGSGIE APSCGSGDYS YTGFYMGGYI F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25291307107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap484718
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3719800.0AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds.
GenBankAY5195930.0AY519593.1 Arabidopsis thaliana MYB transcription factor (At3g30210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879912.10.0myb-related protein 305
TrEMBLD7LP240.0D7LP24_ARALL; MYB121
STRINGfgenesh2_kg.5__710__AT3G30210.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-160myb domain protein 121