PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 484673
Common NameARALYDRAFT_484673
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 323aa    MW: 36322.5 Da    PI: 8.4378
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
484673genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.42.2e-56241501129
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103
             lppGfrFhPtdeel+++yL++kv ++ +++  +i evd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nratk+gyWkatgkdke+++ +++lvg+k
  484673  24 LPPGFRFHPTDEELITHYLRPKVLNTFFSA-IAIGEVDLNKVEPWDLPWKAKIGEKEWYFFCVRDRKYPTGLRTNRATKAGYWKATGKDKEIFK-GKSLVGMK 124
             79*************************999.88***************98999*****************************************.999***** PP

     NAM 104 ktLvfykgrapkgektdWvmheyrle 129
             ktLvfykgrapkg+kt+Wvmheyrle
  484673 125 KTLVFYKGRAPKGVKTNWVMHEYRLE 150
             ************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-6221174IPR003441NAC domain
PROSITE profilePS5100557.33424174IPR003441NAC domain
PfamPF023652.7E-3025149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0051091Biological Processpositive regulation of sequence-specific DNA binding transcription factor activity
GO:1900057Biological Processpositive regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDYKVSRIGE IVEGEVEDSE KIDLPPGFRF HPTDEELITH YLRPKVLNTF FSAIAIGEVD  60
LNKVEPWDLP WKAKIGEKEW YFFCVRDRKY PTGLRTNRAT KAGYWKATGK DKEIFKGKSL  120
VGMKKTLVFY KGRAPKGVKT NWVMHEYRLE GKYAIDNLPK TAKNECVISR VFHKRADGTK  180
AHMSVGLPPL MDSSPYLKSR GRDSFAGTTL GGLFSNMTCF LDKTTDDKSL VVEFKDDFKN  240
TMFGSASTNL IPNISSLLDY GPLFLQDNSS ILKMLLDSEE TQFKKNLQNS GSSESELIAS  300
SLHGHDPCAS TGPVNLDCVW NF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-50151808171NO APICAL MERISTEM PROTEIN
1ut4_B2e-50151808171NO APICAL MERISTEM PROTEIN
1ut7_A2e-50151808171NO APICAL MERISTEM PROTEIN
1ut7_B2e-50151808171NO APICAL MERISTEM PROTEIN
3swm_A2e-501518011174NAC domain-containing protein 19
3swm_B2e-501518011174NAC domain-containing protein 19
3swm_C2e-501518011174NAC domain-containing protein 19
3swm_D2e-501518011174NAC domain-containing protein 19
3swp_A2e-501518011174NAC domain-containing protein 19
3swp_B2e-501518011174NAC domain-containing protein 19
3swp_C2e-501518011174NAC domain-containing protein 19
3swp_D2e-501518011174NAC domain-containing protein 19
4dul_A2e-50151808171NAC domain-containing protein 19
4dul_B2e-50151808171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap484673
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0626380.0AY062638.1 Arabidopsis thaliana Unknown protein (MRI12.1) mRNA, complete cds.
GenBankBT0087160.0BT008716.1 Arabidopsis thaliana At3g29035 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882368.10.0NAC domain-containing protein 59
SwissprotQ9LJW30.0NAC59_ARATH; NAC domain-containing protein 59
TrEMBLD7LM770.0D7LM77_ARALL; ANAC059/ATNAC3
STRINGfgenesh2_kg.5__665__AT3G29035.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.10.0NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]