PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

484662

Common Name

ARALYDRAFT_484662

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

ZF-HD

Protein Properties

Length: 300aa MW: 31929.4 Da PI: 9.2773

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
484662	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	107.6	7.4e-34	40	98	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++v+YkeClkN Aa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre+++ 484662 40 NTVTYKECLKNYAAAIGGHALDGCGEFMPSPSSTpSDPTSLKCAACGCHRNFHRREPDD 98 689****************************99*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-16	42	95	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.2E-28	42	96	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.5E-30	43	95	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.768	44	95	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.79E-18	175	244	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.6E-29	178	244	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	8.2E-27	184	241	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MDMTPKSPEP ESETPTRIQP AKPISFSNGI IKRHHHHHHN TVTYKECLKN YAAAIGGHAL 60 DGCGEFMPSP SSTPSDPTSL KCAACGCHRN FHRREPDDSS SVPPPSLLPS STTTAAIEYQ 120 PHHRHHPPPP LAPPLPRSPS SSSPPPISSS YMLLALSGNN KTTPFSDLNF AAAANNLSAA 180 PGSRKRFRTK FSSNQKEKMH EFAARIGWKI QKRDEDEVRD FCREIGVDKG VLKVWMHNNK 240 NSFKFSGGGA TAVNGIGGEN NNNDGVRGGS GLANKDGGGG GGRFESDSGG NVNASSSSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-21	183	247	16	80	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	484662

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117188	0.0	AK117188.1 Arabidopsis thaliana mRNA, clone: RAFL16-72-M15.
GenBank	AP002049	0.0	AP002049.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYI13.
GenBank	AY093171	0.0	AY093171.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBank	AY128820	0.0	AY128820.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020882234.1	0.0	zinc-finger homeodomain protein 9
Swissprot	Q9LHF0	1e-153	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	D7LM59	0.0	D7LM59_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.5__654__AT3G28920.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	2e-95	homeobox protein 34

Link Out ? help Back to Top
Phytozome	484662
Entrez Gene	9311548

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]