PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 484622 | ||||||||
Common Name | ARALYDRAFT_484622 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 319aa MW: 35695.7 Da PI: 6.943 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +++ +v+ +G g+W++I+++ g++R++k+c++rw +yl 484622 14 KGLWTEEEDAKILAYVAIHGVGNWSLIPKKAGLNRCGKSCRLRWTNYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 69 | 110 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++++E+el++++++ G++ W++Iar+++ gRt++++k++w++ 484622 69 SFSPQEEELIIECHRIIGSR-WSSIARKLP-GRTDNDVKNHWNT 110 79******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.917 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-13 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.801 | 66 | 116 | IPR017930 | Myb domain |
CDD | cd00167 | 1.82E-11 | 69 | 110 | No hit | No description |
Pfam | PF00249 | 1.6E-14 | 69 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MGRPPCCDKS NVKKGLWTEE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY 60 LRPDLKHDSF SPQEEELIIE CHRIIGSRWS SIARKLPGRT DNDVKNHWNT KLKKKLMKMG 120 IDPVTHKPVS QVLSEFRNIS GHGNASFKTE PSNNSILTQS NSAWEMMRNT TTNHESYYNS 180 SMMFTNSASS EFQTTPFHFS GHPSNLLNGT TSSCSSSSSS ASITQPNQVP QTPVTNFYWS 240 DFLLSDPVPQ VVGSSATSDL TFAQNEHHFN NQAEYISQNI DSNASVTCHS ASSFVDEILD 300 KDQEMLSQFP QLLNDFDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 484622 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519591 | 0.0 | AY519591.1 Arabidopsis thaliana MYB transcription factor (At3g28470) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002877110.1 | 0.0 | transcription factor MYB35 | ||||
Swissprot | Q9LSI7 | 0.0 | MYB35_ARATH; Transcription factor MYB35 | ||||
TrEMBL | D7LPU4 | 0.0 | D7LPU4_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.5__614__AT3G28470.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 0.0 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | 484622 |
Entrez Gene | 9313178 |
Publications ? help Back to Top | |||
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