PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 484332 | ||||||||
Common Name | ARALYDRAFT_484332 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 334aa MW: 38031.2 Da PI: 6.1932 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44 | 4e-14 | 133 | 179 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L 484332 133 KSHSEAERRRRERINTHLAKLRSILPNT-----TKTDKASLLAEVIQHMKEL 179 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.85 | 130 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-11 | 133 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.1E-14 | 134 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-15 | 134 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-13 | 136 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.56E-4 | 143 | 182 | No hit | No description |
CDD | cd04873 | 2.64E-4 | 217 | 295 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0080147 | Biological Process | root hair cell development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MYAMKEEDCL QTFHNLQDYQ DQFLLHHHPQ ILPWTSTSLP SFDPTHFPSN PTRYSDPVHY 60 FNRRASSSSS FDYNDGFVSP PPSMDNHQNH LRILSEALGP IMRRGSSFGF DGEIMGKLSA 120 QEVMDAKALA ASKSHSEAER RRRERINTHL AKLRSILPNT TKTDKASLLA EVIQHMKELK 180 RQTSQITDTC QVPTECDDLT VESSYNDEEG NLVIRASFCC QDRTDLMHDV INALKSLRLR 240 TLKAEIATVG GSSQEHLDHD SYHRNFDGDD VEAYDEERMM NNRVSSIEEA LKAVIEKCVH 300 NNDESNDNNN LEKSSSGSIK RQRTSKMMNR CYN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 143 | ERRRRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 484332 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY058840 | 0.0 | AY058840.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds. | |||
GenBank | AY079033 | 0.0 | AY079033.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds. | |||
GenBank | AY086383 | 0.0 | AY086383.1 Arabidopsis thaliana clone 247881 mRNA, complete sequence. | |||
GenBank | DQ205679 | 0.0 | DQ205679.1 Arabidopsis thaliana ABA-regulated protein AIG1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020882201.1 | 0.0 | LOW QUALITY PROTEIN: transcription factor AIG1 | ||||
Swissprot | Q9LS08 | 0.0 | BH032_ARATH; Transcription factor AIG1 | ||||
TrEMBL | D7LQT5 | 0.0 | D7LQT5_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.5__324__AT3G25710.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13949 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 0.0 | basic helix-loop-helix 32 |
Link Out ? help Back to Top | |
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Phytozome | 484332 |
Entrez Gene | 9311340 |