PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

484308

Common Name

ARALYDRAFT_484308

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 145aa MW: 16812.5 Da PI: 6.7898

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
484308	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.4	7.3e-14	52	110	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++rr+ +NRe+ArrsR RK+ ++eL+ v L +eN L+++l++ +++ +++ +e+ 484308 52 RKQRRMLSNRESARRSRMRKQRHLDELQAQVIRLRNENNCLIDKLNQVSETQDSVLKEN 110 79************************************************999888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.6E-16	48	112	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.1E-11	50	102	No hit	No description
PROSITE profile	PS50217	11.323	50	113	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.95E-12	52	101	No hit	No description
Pfam	PF00170	9.7E-12	52	110	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.96E-15	53	101	No hit	No description
PROSITE pattern	PS00036	0	55	70	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MPSSPTSSLN YLNDLIINNN YSSSSNSQDL MMSNNSTSDE DHHQSIVILD ERKQRRMLSN 60 RESARRSRMR KQRHLDELQA QVIRLRNENN CLIDKLNQVS ETQDSVLKEN SKLKEEASDL 120 RQLVCELKSN KNNNNSFPRE FEDN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	71	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00262	DAP	Transfer from AT2G04038	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	484308

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007178	0.0	AC007178.6 Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002875253.2	2e-97	basic leucine zipper 43
Swissprot	Q9FMC2	1e-28	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	D7LQQ5	3e-96	D7LQQ5_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.5__300__AT2G04038.1	4e-97	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2892	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04038.1	2e-61	basic leucine-zipper 48

Link Out ? help Back to Top
Phytozome	484308
Entrez Gene	9311321

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]