PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 483978
Common NameARALYDRAFT_483978
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 325aa    MW: 36900.3 Da    PI: 6.3714
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
483978genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box192.9e-061042234
  zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeH 34
              + r C+ +++  +  +C+ ++  lC  C  + H
    483978 10 RRRLCDYCDSSVALVYCKADSAKLCLACDKQVH 42
              5689**************************999 PP
2zf-B_box21.84e-075696541
  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvvp 41
               C+ +++ + +lfCe+ ++ lC++C  ++H      H+++p
    483978 56 LCDSCHDSPSSLFCETERSVLCQNCDWQHHTAssslHSRRP 96
              7***************************7744778887765 PP
3CCT60.36.3e-21279322144
     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
             R+ al+RYkeK+k+R++eK+irYesRK++AesR R++GrF+k+a
  483978 279 RNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAA 322
             899***************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.438956IPR000315B-box-type zinc finger
SMARTSM003366.0E-14956IPR000315B-box-type zinc finger
CDDcd000217.18E-61256No hitNo description
PROSITE profilePS5011910.0965297IPR000315B-box-type zinc finger
CDDcd000211.92E-85696No hitNo description
SMARTSM003360.45797IPR000315B-box-type zinc finger
PROSITE profilePS5101714.743279321IPR010402CCT domain
PfamPF062037.8E-15279321IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEEEEGHQQR RRLCDYCDSS VALVYCKADS AKLCLACDKQ VHVTNQLFAK HFRSLLCDSC  60
HDSPSSLFCE TERSVLCQNC DWQHHTASSS LHSRRPFEGF TGCPSVPELL AIVGLDDLTL  120
DSGLLWESPE IASLNDLVVS GGSGTHNFRA TDVPPLPKNR HATCGKYKDE MIRQLRGLAR  180
SERTCLKFET REAEMDAGFQ FLAPDLFSTS ELESGLKWFD QQDHEDFPYC SLLKNSSESD  240
EKPENVDRES SSVMEEEIVM VPVCTSTRST THEINSLERN SALSRYKEKK KSRRYEKHIR  300
YESRKVRAES RTRIRGRFAK AADP*
Cis-element ? help Back to Top
SourceLink
PlantRegMap483978
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935980.0AB493598.1 Arabidopsis thaliana At2g47890 mRNA for hypothetical protein, partial cds, clone: RAAt2g47890.
GenBankBT0234130.0BT023413.1 Arabidopsis thaliana At2g47890 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020874876.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_020884406.10.0zinc finger protein CONSTANS-LIKE 13
SwissprotO822560.0COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLD7LHD30.0D7LHD3_ARALL; Zinc finger (B-box type) family protein
STRINGfgenesh2_kg.4__3038__AT2G47890.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]