PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 483645
Common NameARALYDRAFT_483645
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 326aa    MW: 37288.3 Da    PI: 5.0922
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
483645genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039426123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             ykC  C ksF +   L  H+r+H
   483645  4 YKCRFCFKSFINGRALGGHMRSH 26
             9*********************9 PP
2zf-C2H215.35.5e-05202224123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              +kC+ Cgk+F++   L  H  +H
   483645 202 FKCETCGKVFKSYQALGGHRASH 224
              89***********9999998887 PP
3zf-C2H2120.00067251273123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++Cp+C ++F++   L  H r+H
   483645 251 HECPICFRVFTSGQALGGHKRSH 273
              79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.05E-9326No hitNo description
PfamPF139127.8E-4327IPR007087Zinc finger, C2H2
SMARTSM003550.036426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576676.05E-9197224No hitNo description
PfamPF139122.1E-11201226IPR007087Zinc finger, C2H2
SMARTSM003550.013202224IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.655202229IPR007087Zinc finger, C2H2
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
PfamPF139124.8E-11250273IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182251273IPR007087Zinc finger, C2H2
SMARTSM003550.15251273IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280253273IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MERYKCRFCF KSFINGRALG GHMRSHMLSL SAKRELYELT GEEAEERPSQ LSDDDDTESD  60
ASSSGEEQDH LNCGEFDNLK MNLLDDELEF DFAEDDDDVE SETESSRINP TRRRSKRTRK  120
LGSFDFDFKK LKTSQPSELV TEPEHHSSAS DTTTEEDLAF CLIMLSRDKW KQQKKKKQRV  180
EEEDETDHDS EDYKPDKNRG RFKCETCGKV FKSYQALGGH RASHKKNKAC MTKTEQVKTE  240
YVLGAKEKKV HECPICFRVF TSGQALGGHK RSHGSNIGAG RGLSVSQIVQ IDKEEEEVSV  300
KQRMIDLNLP ALNEEDETSL VFDEW*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap483645
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0746550.0AY074655.1 Arabidopsis thaliana At2g45120/T14P1.7 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882791.10.0zinc finger protein ZAT4
SwissprotQ9SHD01e-174ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLD7LBV60.0D7LBV6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__2705__AT2G45120.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-144C2H2-like zinc finger protein