PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

483462

Common Name

ARALYDRAFT_483462

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 919aa MW: 101580 Da PI: 5.6921

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
483462	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.2	4.3e-25	559	622	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLg.............vclTvLKriCRqyGIkRWPhRkiksl 52 ek+++l+ l+++Fs+++kdAAk+Lg c+T+LKriCRq+GI+RWP+Rki+++ 483462 559 EKNVTLSALQQHFSGSLKDAAKSLGgetstffpgmdliFCPTTLKRICRQHGIMRWPSRKINKV 622 89*********************************99*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.845	548	642	IPR003035	RWP-RK domain
Pfam	PF02042	9.2E-26	561	622	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-22	808	900	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.8E-23	816	897	No hit	No description
PROSITE profile	PS51745	21.727	818	900	IPR000270	PB1 domain
SMART	SM00666	6.1E-25	818	900	IPR000270	PB1 domain
CDD	cd06407	3.76E-38	819	899	No hit	No description
Pfam	PF00564	8.5E-18	821	899	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence Send to blast
MDGLSTTFGS GVRSLLSDDM LNSSSELMNF DSFAAWCNSP SATDILFAQY GLSNSQPMPF 60 GAFTSFHAAE PKATSLTRSF HDLESSYYGQ ERSSVQELSS QFHRSSDSDE LSGKRRKVVN 120 QKIGFPNVLN CTIPRSLSHS LDEKMLKALS LFMESSGSGE GILAQVWTPI RTGDQYLLST 180 CDQAYLLDPR LSQYREVSRK FTFASEANQS SFPGLPGRVF ISGVPEWTSN IMYYKTDEYL 240 RMKHAIDNEV RGSIAIPILE ASGTSCCAVM EFVTSKEKPN FDMEMDSVCR ALQAVNLRTS 300 AIPRPQYLSS SQRDALAEIQ DVLRAVCHAH KLPLALAWIP CRKDQSIRVS GPKSGENYIL 360 CIEETACYVN DMEMKGFVHA CLEHCLREKE GIVGKAFISN QPFFSSDVKS YDISEYPIVQ 420 HARKYGLNAA VAIKLRSTYT GEDDYILELF LPVSMKGSLE QQLLLDSLSG TMQRICRTLR 480 TVSEVGSTKK EVSNFPQITS LGNLGNFQTR SLDSEVNSTR SIFSGMSSDK ENSITISQGA 540 LEQDMSKART LEKKKSTTEK NVTLSALQQH FSGSLKDAAK SLGGETSTFF PGMDLIFCPT 600 TLKRICRQHG IMRWPSRKIN KVNRSLRKIQ TVLDSVQGVE GGLKFDSTTG EFIAVGPLIQ 660 EFDTQKGLSS HGNDAHARRS QEDMTDDTSF ELHEAKFVDN AIKLEEDMIM NQARTGSFME 720 INASGQPWGW MAEQSGLNGS EGIHSVCNLS SLEISDGMDP TIRCSGSIVE PNQSMSCSIS 780 DSSNGSGAVM RGSSSTSMED WNQMKTQNNN SGESRSTTLI VKATYREDTV RFKFEPSVGC 840 PQLYKEVGKR FKLQDGSFQL KYLDDEEEWV MLVTDSDLQE CLEILYGMGK HSVKFLVRDL 900 PVLIGSSAGS NGYLGTGL*

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence Send to blast

MDGLSTTFGS GVRSLLSDDM LNSSSELMNF DSFAAWCNSP SATDILFAQY GLSNSQPMPF  60
GAFTSFHAAE PKATSLTRSF HDLESSYYGQ ERSSVQELSS QFHRSSDSDE LSGKRRKVVN  120
QKIGFPNVLN CTIPRSLSHS LDEKMLKALS LFMESSGSGE GILAQVWTPI RTGDQYLLST  180
CDQAYLLDPR LSQYREVSRK FTFASEANQS SFPGLPGRVF ISGVPEWTSN IMYYKTDEYL  240
RMKHAIDNEV RGSIAIPILE ASGTSCCAVM EFVTSKEKPN FDMEMDSVCR ALQAVNLRTS  300
AIPRPQYLSS SQRDALAEIQ DVLRAVCHAH KLPLALAWIP CRKDQSIRVS GPKSGENYIL  360
CIEETACYVN DMEMKGFVHA CLEHCLREKE GIVGKAFISN QPFFSSDVKS YDISEYPIVQ  420
HARKYGLNAA VAIKLRSTYT GEDDYILELF LPVSMKGSLE QQLLLDSLSG TMQRICRTLR  480
TVSEVGSTKK EVSNFPQITS LGNLGNFQTR SLDSEVNSTR SIFSGMSSDK ENSITISQGA  540
LEQDMSKART LEKKKSTTEK NVTLSALQQH FSGSLKDAAK SLGGETSTFF PGMDLIFCPT  600
TLKRICRQHG IMRWPSRKIN KVNRSLRKIQ TVLDSVQGVE GGLKFDSTTG EFIAVGPLIQ  660
EFDTQKGLSS HGNDAHARRS QEDMTDDTSF ELHEAKFVDN AIKLEEDMIM NQARTGSFME  720
INASGQPWGW MAEQSGLNGS EGIHSVCNLS SLEISDGMDP TIRCSGSIVE PNQSMSCSIS  780
DSSNGSGAVM RGSSSTSMED WNQMKTQNNN SGESRSTTLI VKATYREDTV RFKFEPSVGC  840
PQLYKEVGKR FKLQDGSFQL KYLDDEEEWV MLVTDSDLQE CLEILYGMGK HSVKFLVRDL  900
PVLIGSSAGS NGYLGTGL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	483462

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002335	0.0	AC002335.3 Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete sequence.
GenBank	AY102562	0.0	AY102562.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY102563	0.0	AY102563.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY649251	0.0	AY649251.1 Arabidopsis thaliana hypothetical protein (At2g43500) gene, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020883776.1	0.0	protein NLP8 isoform X2
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	D7LK24	0.0	D7LK24_ARALL; RWP-RK domain-containing protein
STRING	fgenesh2_kg.4__2522__AT2G43500.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	483462
Entrez Gene	9316116

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]