PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 483251
Common NameARALYDRAFT_483251
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 432aa    MW: 47368.8 Da    PI: 8.6774
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
483251genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.98.9e-1772131155
     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
             s y+GV++++++gr++A+++d  ++n+   k+ k++++g ++ +e Aa+a++ a++k++g
  483251  72 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYIGAYDDEEAAARAYDLAALKYWG 131
             57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.6E-1372131IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1672140IPR016177DNA-binding domain
PROSITE profilePS5103219.83673139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-1573140IPR001471AP2/ERF domain
SMARTSM003808.5E-2473145IPR001471AP2/ERF domain
PRINTSPR003674.3E-57485IPR001471AP2/ERF domain
PRINTSPR003674.3E-5121141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MASVSSSDQG PKTEAGCSGG GGGGGGESSE TVAASDQMLL YRGFKKAKKE RGCTAKERIS  60
KMPPCTAGKR SSIYRGVTRH RWTGRYEAHL WDKSTWNQNQ NKKGKQVYIG AYDDEEAAAR  120
AYDLAALKYW GPGTLINFPV TDYTRDLEEM QNLSREEYLA SLRRYPFGRK SSGFSRGIAK  180
YRGLQSRWDA SASRMPGPEY FSNIHYGAGD DRGTEGDFLG SFCLERKIDL TGYIKWWGVN  240
KTRQPESSSK ASEDANVEDA GTELKTLEHT SQATEPYKAP NLGVLRGTQR KEKEISSPSS  300
SSALSILSQS PAFKSLEEKV LKIQESCNND NDENANRNII NMEKNHGKAI EKPVVSHGVA  360
LGGAAVLSLQ KSMYPLTSLL TAPLLTNFNT LDPLADPILW TPFLPSGSSH TSEVTKTETS  420
CSTYSYIPQE K*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap483251
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1187890.0AK118789.1 Arabidopsis thaliana At2g41710 mRNA for putative AP2 domain transcription factor, complete cds, clone: RAFL21-12-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884199.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLD7LHA70.0D7LHA7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__2311__AT2G41710.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.20.0AP2 family protein