PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 482841
Common NameARALYDRAFT_482841
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 339aa    MW: 38771.2 Da    PI: 9.7682
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
482841genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.2e-3250103255
  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+
   482841  50 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 103
              8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-2946104IPR009057Homeodomain-like
PROSITE profilePS5129412.75946106IPR017930Myb domain
SuperFamilySSF466891.97E-1448104IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-2250105IPR006447Myb domain, plants
PfamPF002491.2E-951102IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEGGEKTNRE DEEEAEEEEE GEESKVSSNS TVEESDKKTK VRPYVRSKVP RLRWTPDLHL  60
RFVRAVERLG GQERATPKLV RQMMNIKGLS IAHVKSHLQM YRSKKIDDQG QAIADHKHLF  120
ETSTDRNIYK LSQLPMFRGY NRNYDSPFRY GSKFSNASLW NSSSHGTDRS LIEQIRPGLI  180
RSSSVSNNIR GSEYWTNNRS FKNIYSSSIS NHLPKLRHDH QERTNPVTFN SMQGHSRTFQ  240
KFHIGVEEST NHAYFSKTTG KRNASTSIDL DLDLSLKLRQ PEKTILEETE TATTTTDQTL  300
SLSLCPGSSS WKKSRLIKKD EEDRTVKIGQ ASTLDLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-1751105357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-1751105357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-1751105357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-1751105357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap482841
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1176890.0AK117689.1 Arabidopsis thaliana At2g38300 mRNA for unknown protein, complete cds, clone: RAFL17-35-G17.
GenBankBT0049730.0BT004973.1 Arabidopsis thaliana clone U50495 unknown protein (At2g38300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885832.10.0uncharacterized protein LOC9317643 isoform X2
TrEMBLD7LLH20.0D7LLH2_ARALL; DNA binding protein
STRINGfgenesh2_kg.4__1901__AT2G38300.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.10.0G2-like family protein