PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 482686
Common NameARALYDRAFT_482686
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 396aa    MW: 44771.1 Da    PI: 8.1386
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
482686genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-08285332448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT +E  +lvd++  +G g W+ I +++     +Rt+ +++++w+++l
           482686 285 WTVDEVMKLVDGISHFGVGKWTDIKNHFFhsaAHRTPVDIRDKWRNLL 332
                      **********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-13277340IPR009057Homeodomain-like
PROSITE profilePS5129415.64277336IPR017930Myb domain
SMARTSM007178.9E-9281334IPR001005SANT/Myb domain
SuperFamilySSF466895.16E-17283342IPR009057Homeodomain-like
CDDcd116609.47E-21283333No hitNo description
PfamPF139218.7E-8285340No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGPFGMDTTP EFPDTFAGFK SGSVDEILGH SMEDKMSDMK HFLMDPNHDN TAVNSFLGLG  60
MENMGLSTKI EEFSHGFDFS FLPDYGGLNS YSTKDVEAGL KFDILDGFLD GVDEVEDIYA  120
SHDLSSIGNH FLPETEVKKK VSELDGDPYG LVNLSSESFS PGISGSIGLS EWSKETVPHA  180
ESQNVSSEKF KDSLDSNGSE DDKKPLSTFI GSWVKRGKNR KKNLLNTACR RLDSSRERMS  240
CVSYDFRPRK GPMKKYIHTS TENTFSQSYT PILTRSDRRK NQRMWTVDEV MKLVDGISHF  300
GVGKWTDIKN HFFHSAAHRT PVDIRDKWRN LLKASYNDRE AEEKRKSVAR SIPKEILHRV  360
RELASLHPYP FSKSSCFVHD SSRSRSTSRK KKKRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388393RKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap482686
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304480.0AK230448.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-48-F14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883838.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC9315712
TrEMBLD7LJB30.0D7LJB3_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__1746__AT2G37025.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.19e-23TRF-like 3