PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 482564
Common NameARALYDRAFT_482564
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 672aa    MW: 73365.2 Da    PI: 6.8524
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
482564genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-093964331954
               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
               Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
    482564 396 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 433
               554459******************************88 PP
2BELL121.73.1e-39255326172
    BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
             erqe+q+kkakL ++l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+FrcLk+aia+qi
  482564 255 ERQEIQMKKAKLNNMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRCLKEAIAGQI 326
             79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.0E-82175324IPR006563POX domain
PfamPF075261.0E-46181323IPR006563POX domain
PROSITE profilePS5007112.26374437IPR001356Homeobox domain
SMARTSM003892.3E-9377441IPR001356Homeobox domain
CDDcd000863.46E-12377437No hitNo description
SuperFamilySSF466895.56E-17378444IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-29380444IPR009057Homeodomain-like
PfamPF059202.8E-18394433IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MAAYFHGNPP EISAGSDGGL QTLILMNPTT YVQYTQQDND SNNNNNNNSN TNNNNSFVFL  60
DSHAPQPNAS QQFVGIPLSG HEAASITAAD NISVLHGYPP RVQYSLYGSH QVDPTHQQAA  120
CETPRAQQGL SLTLSSQQQQ QQQHHQQHQP IHVGFGSGPG EDIRVGSGST GSGVTNGIAN  180
LVSSKYLKAA QELLDEVVNA DSDDMNAKSQ LFSSKKGSSG NDKAVGESSA GAGGEGSGGG  240
GEAAGKRTVE LGTAERQEIQ MKKAKLNNML HEVEQRYRQY HQQMQMVISS FEQAAGIGSA  300
KSYTSLALKT ISRQFRCLKE AIAGQIKAAN KSLGEEDSVS GVGRFEGSRL KFVDHHLRQQ  360
RALQQLGMIQ HPSNNAWRPQ RGLPERAVSV LRAWLFEHFL HPYPKDSDKH MLAKQTGLTR  420
SQVSNWFINA RVRLWKPMVE EMYMEEMKEQ GKNMGSMEKT PLDQSNEDSA SKSTSNQEKS  480
PMADTNFHMN PNHNGDLEGV TGMQGSPKRL RTSDETMMQP INADFSSNEK LTMKILEERQ  540
GIRSDGGYPF MGNFGQYQMD EMSRFDVVSD QELMAQRYSG NNNGVSLTLG LPHCDSLSST  600
HHQGFMQTHH GIPIGRRVKI GETEEYGAAT INGGSSATTA HSSAAAAAAY NGMNIQNQKR  660
YVAQLLPDFV A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16383441563Homeobox protein Meis2
3k2a_B2e-16383441563Homeobox protein Meis2
4xrs_A1e-16383440158Homeobox protein Meis1
4xrs_B1e-16383440158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap482564
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2272720.0AK227272.1 Arabidopsis thaliana mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL11-09-C20.
GenBankAY0721750.0AY072175.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds.
GenBankAY0965480.0AY096548.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds.
GenBankAY0998540.0AY099854.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds.
GenBankBT0084220.0BT008422.1 Arabidopsis thaliana At2g35940 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881420.10.0BEL1-like homeodomain protein 1
RefseqXP_020883700.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLD7LIM10.0D7LIM1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__1624__AT2G35940.30.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50082650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.30.0BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]