PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 482096 | ||||||||
Common Name | ARALYDRAFT_482096 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 154aa MW: 17192.2 Da PI: 5.7988 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.5 | 0.00014 | 39 | 79 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R d++ ++++ L++l+ + +K + a++L + ++YI+ Lq 482096 39 KERKDKLGERISALQQLVSPY-----GKTDTASVLLEGMQYIQFLQ 79 67899999***********99.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.937 | 29 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-8 | 37 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-11 | 38 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.60E-5 | 39 | 83 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MEYSRDSADM MMENKRNVYS PEENNIKRHK SSDLSFSSKE RKDKLGERIS ALQQLVSPYG 60 KTDTASVLLE GMQYIQFLQE QVKVLSAPYL QATPTTSQEE LEEYSLRSKG LCLVPLEYTS 120 GVAQTNGADI WAPVKTPTSS HAFNLSSSNS PFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 482096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ576041 | 0.0 | AJ576041.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-beta gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020883447.1 | 1e-111 | transcription factor bHLH154 | ||||
Swissprot | Q7XJU1 | 1e-102 | BH154_ARATH; Transcription factor bHLH154 | ||||
TrEMBL | D7LDP0 | 1e-109 | D7LDP0_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.4__1156__AT2G31730.1 | 1e-110 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3316 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31730.1 | 2e-94 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 482096 |
Entrez Gene | 9317261 |