PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

482070

Common Name

ARALYDRAFT_482070

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

DBB

Protein Properties

Length: 239aa MW: 26767.1 Da PI: 4.9162

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
482070	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.2	1.5e-07	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e+ +++l C ++ lC++C +e H H+ 482070 4 QCDVCEKAPATLICCADEAALCAKCDVEVHAAnklaskHQ 43 7*****************************6556666665 PP
2	zf-B_box	27.2	8.1e-09	55	86	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+ + ek + +fC +++ llC+dC +++H 482070 55 PPCDICLEKAAFIFCVEDRALLCRDCDEATHA 86 68*****************************4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.371	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.24E-6	3	47	No hit	No description
Pfam	PF00643	8.6E-6	4	44	IPR000315	B-box-type zinc finger
SMART	SM00336	1.8E-9	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	5.9E-14	52	99	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.343	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.9E-6	55	95	IPR000315	B-box-type zinc finger
CDD	cd00021	9.51E-7	55	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010100	Biological Process	negative regulation of photomorphogenesis
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MKIQCDVCEK APATLICCAD EAALCAKCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC 60 LEKAAFIFCV EDRALLCRDC DEATHAPNTR SANHQRFLAT GIRVALSSTS CRQEVEKNHF 120 DPSNQQSLSK PPTQQPAAPS PLWATDEFFR YSDLECSNKQ KEQLDLGELD WLAEMGLFGD 180 QPDQEALPAA EVPELSFSHL AHVHSYNRPM KSNVPNKKQR LEYRYDDDEE HFLVPDLG*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:23624715}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	482070

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF323666	0.0	AF323666.1 Arabidopsis thaliana B-box zinc finger protein STH mRNA, complete cds.
GenBank	AF325077	0.0	AF325077.1 Arabidopsis thaliana putative CONSTANS-like B-box zinc finger protein (At2g31380) mRNA, complete cds.
GenBank	AF370311	0.0	AF370311.1 Arabidopsis thaliana putative CONSTANS B-box zinc finger protein (At2g31380) mRNA, complete cds.
GenBank	AY063097	0.0	AY063097.1 Arabidopsis thaliana putative CONSTANS B-box zinc finger protein (At2g31380) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020883610.1	1e-177	B-box zinc finger protein 25 isoform X1
Swissprot	Q9SID1	1e-173	BBX25_ARATH; B-box zinc finger protein 25
TrEMBL	D7LDK4	1e-176	D7LDK4_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.4__1130__AT2G31380.1	1e-176	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2711	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31380.1	1e-176	salt tolerance homologue

Link Out ? help Back to Top
Phytozome	482070
Entrez Gene	9315392

Publications ? help Back to Top
Gangappa SN,Holm M,Botto JF Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development. Plant Signal Behav, 2014. [PMID:23733077] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang X,Lin R Light signaling differentially regulates the expression of group IV of the B-box zinc finger family. Plant Signal Behav, 2017. 12(9): p. e1365213 [PMID:28922622]