PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 482048
Common NameARALYDRAFT_482048
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 431aa    MW: 48603.1 Da    PI: 4.8142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
482048genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.4e-11218262554
             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 Er RR ++N+++e L+ l+P++      K + a+iL+  ++YI++L
  482048 218 PFTTERERRCHLNERYEALKLLIPNP-----SKGDRASILQDGIDYINEL 262
             5678*********************9.....79**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.90E-12211267No hitNo description
Gene3DG3DSA:4.10.280.106.7E-12211271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-14212281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.297213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8216262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-9219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MYEESSCFDP NPMVDNNGSF CAAETTFPVS HQFQPPVGST TNSFNDDLKL PTMEEFSAFP  60
SVISLPNSET QNQNISNNNH LINQMIQEPN WGVSEDNTGF FMNTSHPNTT TTPIPDLLSL  120
LHLPRCSMAL PSSNLSDIMA GSCFTYDPLC HLNLPPQPPL IPSNDYSGYL LGIDTNTTTQ  180
GDESNVGDEN NNAQFDSGII EFSKEIRRKG RGKRKNKPFT TERERRCHLN ERYEALKLLI  240
PNPSKGDRAS ILQDGIDYIN ELRRRVSELK YLVERKRCGG RHKNNELDNN INNNNSNDHD  300
NDEDDIDDEN MEKKPESDVV DQCSSNNSLR CSWLQRKSKV TEVDVRIVDD EVTIKVVQKK  360
KINCLLLVSK VLDQLQLDLY HVAGGQIGEH YSFLFNTKIY EGSTIYASAI ANRVIEVVDK  420
HYMAALPINY *
Cis-element ? help Back to Top
SourceLink
PlantRegMap482048
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5198090.0AJ519809.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor.
GenBankAK1184410.0AK118441.1 Arabidopsis thaliana At2g31210 mRNA for putative bHLH transcription factor (bHLH091), complete cds, clone: RAFL19-68-P06.
GenBankBT0096750.0BT009675.1 Arabidopsis thaliana At2g31210 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882931.10.0transcription factor bHLH91
RefseqXP_020882932.10.0transcription factor bHLH91
SwissprotQ8GX460.0BH091_ARATH; Transcription factor bHLH91
TrEMBLD7LD030.0D7LD03_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.4__1108__AT2G31210.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]