PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 481709
Common NameARALYDRAFT_481709
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 580aa    MW: 65470.8 Da    PI: 7.0789
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
481709genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.37.2e-104414732254
               SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
               ++yp+ ++++ LA+++gL+ +qV++WF N R +
    481709 441 HPYPTDSDKQMLATQTGLSRNQVSNWFINARVR 473
               89*****************************88 PP

2BELL93.91.4e-30312380472
    BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
             +++ k+akLl l+eeV+k+Yk y++ lqtv+ssF++vagl +a+pY+slAlk++Sr+F++L++ai+e++
  481709 312 KNRLKRAKLLFLQEEVCKWYKLYNHHLQTVMSSFNTVAGLRTATPYISLALKRTSRSFKALRTAISEHV 380
             5789**************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-56249378IPR006563POX domain
PfamPF075266.7E-27254377IPR006563POX domain
PROSITE profilePS5007112.066414477IPR001356Homeobox domain
CDDcd000862.04E-11417478No hitNo description
SMARTSM003893.9E-10417481IPR001356Homeobox domain
SuperFamilySSF466898.13E-17419483IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-27420481IPR009057Homeodomain-like
PfamPF059201.4E-18434473IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MNDFPNTWNH HHQQQQQHQN IRIPNNLDLI GILQNQISVP VQTDLYQDST ATFMNMPQSI  60
HRDPQGSSNW RTSDLSQQST VNCSVVNYGY DEAGIRPSNV GDLFSNHFNS RNQILDRPLY  120
VGREIIAQSS MTRRSEVSCL DDNQKGCVTV ACSGTGNEIL KSSYDQGSSS GSYRGELEFL  180
PRLENQLVAH NASQWNHEQL NFTATSHTNR KGFPLSLFSG IPSSRDVGNA AVSSTMNIHG  240
HLGPLGPFTG YASILKSSRF LEPAQQMLEE FCISYASKII SRSESTSMDD DDDDDDDNSS  300
VFSSSYEPVE PKNRLKRAKL LFLQEEVCKW YKLYNHHLQT VMSSFNTVAG LRTATPYISL  360
ALKRTSRSFK ALRTAISEHV KQISSHLSSG DNTVFQKKQR SLIGHNVGFE SQQQHMWRPQ  420
RGLPEPAVAV LRAWLFDHFL HPYPTDSDKQ MLATQTGLSR NQVSNWFINA RVRLWKPMVE  480
EIHTLETKAI KNPDTSHNME PSNRPNTVSS TPSHEQTLTD LSGTKRSRLE YMDMMGFNRG  540
NVSLTLELRR GVDNVIQTQT QTQDHQFGTG DHMFHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15423481563Homeobox protein Meis2
3k2a_B2e-15423481563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for specifying floral primordia and establishing early internode patterning events during inflorescence development. {ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap481709
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0059210.0BT005921.1 Arabidopsis thaliana At2g27990 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883787.10.0BEL1-like homeodomain protein 8 isoform X2
SwissprotQ9SJJ30.0BLH8_ARATH; BEL1-like homeodomain protein 8
TrEMBLD7LIG60.0D7LIG6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__769__AT2G27990.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143211520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.10.0BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]