PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 481709 | ||||||||
Common Name | ARALYDRAFT_481709 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TALE | ||||||||
Protein Properties | Length: 580aa MW: 65470.8 Da PI: 7.0789 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.3 | 7.2e-10 | 441 | 473 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ ++++ LA+++gL+ +qV++WF N R + 481709 441 HPYPTDSDKQMLATQTGLSRNQVSNWFINARVR 473 89*****************************88 PP | |||||||
2 | BELL | 93.9 | 1.4e-30 | 312 | 380 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +++ k+akLl l+eeV+k+Yk y++ lqtv+ssF++vagl +a+pY+slAlk++Sr+F++L++ai+e++ 481709 312 KNRLKRAKLLFLQEEVCKWYKLYNHHLQTVMSSFNTVAGLRTATPYISLALKRTSRSFKALRTAISEHV 380 5789**************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.4E-56 | 249 | 378 | IPR006563 | POX domain |
Pfam | PF07526 | 6.7E-27 | 254 | 377 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.066 | 414 | 477 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.04E-11 | 417 | 478 | No hit | No description |
SMART | SM00389 | 3.9E-10 | 417 | 481 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-17 | 419 | 483 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-27 | 420 | 481 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.4E-18 | 434 | 473 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 580 aa Download sequence Send to blast |
MNDFPNTWNH HHQQQQQHQN IRIPNNLDLI GILQNQISVP VQTDLYQDST ATFMNMPQSI 60 HRDPQGSSNW RTSDLSQQST VNCSVVNYGY DEAGIRPSNV GDLFSNHFNS RNQILDRPLY 120 VGREIIAQSS MTRRSEVSCL DDNQKGCVTV ACSGTGNEIL KSSYDQGSSS GSYRGELEFL 180 PRLENQLVAH NASQWNHEQL NFTATSHTNR KGFPLSLFSG IPSSRDVGNA AVSSTMNIHG 240 HLGPLGPFTG YASILKSSRF LEPAQQMLEE FCISYASKII SRSESTSMDD DDDDDDDNSS 300 VFSSSYEPVE PKNRLKRAKL LFLQEEVCKW YKLYNHHLQT VMSSFNTVAG LRTATPYISL 360 ALKRTSRSFK ALRTAISEHV KQISSHLSSG DNTVFQKKQR SLIGHNVGFE SQQQHMWRPQ 420 RGLPEPAVAV LRAWLFDHFL HPYPTDSDKQ MLATQTGLSR NQVSNWFINA RVRLWKPMVE 480 EIHTLETKAI KNPDTSHNME PSNRPNTVSS TPSHEQTLTD LSGTKRSRLE YMDMMGFNRG 540 NVSLTLELRR GVDNVIQTQT QTQDHQFGTG DHMFHDFVG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 423 | 481 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 423 | 481 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for specifying floral primordia and establishing early internode patterning events during inflorescence development. {ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:16741748}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 481709 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT005921 | 0.0 | BT005921.1 Arabidopsis thaliana At2g27990 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020883787.1 | 0.0 | BEL1-like homeodomain protein 8 isoform X2 | ||||
Swissprot | Q9SJJ3 | 0.0 | BLH8_ARATH; BEL1-like homeodomain protein 8 | ||||
TrEMBL | D7LIG6 | 0.0 | D7LIG6_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.4__769__AT2G27990.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14321 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 0.0 | BEL1-like homeodomain 8 |
Link Out ? help Back to Top | |
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Phytozome | 481709 |
Entrez Gene | 9317025 |
Publications ? help Back to Top | |||
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