PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 481690
Common NameARALYDRAFT_481690
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 277aa    MW: 30045.4 Da    PI: 8.0728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
481690genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00043113135123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              y+C+ C+++Fs+   L  H  +H
   481690 113 YECKTCNRTFSSFQALGGHRASH 135
              99**********99999998887 PP
2zf-C2H213.40.00023188210123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++C++Cg  F++   L  H+r+H
   481690 188 HECSICGSEFTSGQALGGHMRRH 210
              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.7E-9112135No hitNo description
PfamPF139129.8E-13112137IPR007087Zinc finger, C2H2
SMARTSM003550.063113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.99113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576677.7E-9183210No hitNo description
Gene3DG3DSA:3.30.160.609.5E-4186210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-11187211IPR007087Zinc finger, C2H2
SMARTSM003550.019188210IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868188215IPR007087Zinc finger, C2H2
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGQDEVGSDQ TQIIKGKRTK RQRSSSTFVV TAAMTVTSTS SSAGGSGGGR AVSDEYNSAV  60
SSPVTTDCTQ EEEDMAICLI MLARGTVLPS PDLKNSRKTH QKISSENSSF YVYECKTCNR  120
TFSSFQALGG HRASHKKPRT STEEKTRLPL MQPKSSLSEE GQNSHFKVSG SALASQASNI  180
INKANKVHEC SICGSEFTSG QALGGHMRRH RTATTAEVSR NSTEEEIEIN IGRSIEQQRK  240
YLPLDLNLPA PEDDLRESKF QGIVFSATPA LIDCHY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap481690
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0058510.0AC005851.3 Arabidopsis thaliana chromosome 2 clone F24D13 map B68, complete sequence.
GenBankAC0062020.0AC006202.4 Arabidopsis thaliana chromosome 2 clone T3B23 map mi54, complete sequence.
GenBankAK1754930.0AK175493.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-92-D09.
GenBankAK2298120.0AK229812.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-88-O10.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankX986750.0X98675.1 A.thaliana zat5 gene.
GenBankX986780.0X98678.1 A.thaliana mRNA for ZAT5 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880944.20.0zinc finger protein ZAT5
SwissprotQ681X40.0ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLD7LIE10.0D7LIE1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__750__AT2G28200.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-177C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]