PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 481671 | ||||||||
Common Name | ARALYDRAFT_481671 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ARF | ||||||||
Protein Properties | Length: 698aa MW: 76935 Da PI: 7.5699 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.3 | 3.4e-24 | 117 | 218 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +++++ l+v++ 481671 117 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RSESGDLCVGI 215 89****************************987555555..8************************************************..4589999**** PP E-S CS B3 97 frk 99 +r+ 481671 216 RRA 218 997 PP | |||||||
2 | Auxin_resp | 114.6 | 8.9e-38 | 278 | 361 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ +a+ +++FevvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ 481671 278 AVARAACGQAFEVVYYPRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 361 56778899**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.0E-37 | 110 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.58E-29 | 113 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.28E-21 | 116 | 217 | No hit | No description |
PROSITE profile | PS50863 | 13.155 | 117 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.7E-22 | 117 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-21 | 117 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.7E-32 | 279 | 361 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 20.481 | 585 | 673 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MEQEKSLDPQ LWHACAGSMV QIPSVNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV 60 SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP SSDVNVNGNG NEKPASFAKT 120 LTQSDANNGG GFSVPRYCAE TIFPRLDYTA EPPVQTVIAK DIHGETWKFR HIYRGTPRRH 180 LLTTGWSTFV NQKKLIAGDS IVFLRSESGD LCVGIRRAKR GGLGSTGLGS DNPYPGFSGF 240 LRDDETSTTS KLMMMKRNGN DGNAAAGGRV RVEAVAEAVA RAACGQAFEV VYYPRASTPE 300 FCVKAADVRS AMRIRWCSGM RFKMAFETED SSRISWFMGT VSAVQVADPI RWPNSPWRLL 360 QVAWDEPDLL QNVKRVSPWL VELVSNMPAI HLSPFSPRKK IRIPQPFEFP FDGTKFPIFS 420 PGFANNGGGE SMCYLSNDNN NAPAGIQGAR QAQQLFGSPS PSLLSDLNLS SYSSNKLQSP 480 AMFLSGFNPR HHYDNIVSRQ ARDTENSNNI SCSLTIGNPA MVQDKKKSGG SVKTHQFLLF 540 GQPILTEQQV MNRKRSLEEE AEAQEEKSSA ARGLTWNYGF QGLETGHCKV FMESEDVGRT 600 LDLSVIGSYQ ELYRKLAEMF HIEERSDLLT HVVYRDANGA IKRIGDEPFS DFMKSTKRLT 660 IKMDIGGDNV RKTWITGIRT GENGIDATKT GPLSIFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-80 | 7 | 382 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 481671 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF325073 | 0.0 | AF325073.1 Arabidopsis thaliana unknown protein (At2g28350) mRNA, complete cds. | |||
GenBank | AF336919 | 0.0 | AF336919.1 Arabidopsis thaliana clone C00034 (b) auxin response factor 10 (At2g28350) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020884399.1 | 0.0 | auxin response factor 10 | ||||
Swissprot | Q9SKN5 | 0.0 | ARFJ_ARATH; Auxin response factor 10 | ||||
TrEMBL | D7LHN6 | 0.0 | D7LHN6_ARALL; Auxin response factor | ||||
STRING | fgenesh2_kg.4__731__AT2G28350.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Link Out ? help Back to Top | |
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Phytozome | 481671 |
Entrez Gene | 9316999 |