PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 481569
Common NameARALYDRAFT_481569
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 291aa    MW: 33536.9 Da    PI: 6.4303
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
481569genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00018120141223
              EETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
              +C  Cgk F + ++L  H+r+H
   481569 120 RCCLCGKEFQTMHSLFGHMRRH 141
              7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.73E-64973No hitNo description
SMARTSM003551.35173IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3075178IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
PfamPF139120.0165373IPR007087Zinc finger, C2H2
SuperFamilySSF576679.73E-6114141No hitNo description
SMARTSM003550.091119141IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806119141IPR007087Zinc finger, C2H2
PfamPF139123.6E-4120143IPR007087Zinc finger, C2H2
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKRTRDLYDD DDSSSSSESE EFHRTKLRVK VKLPEERSED EDESPQPLRK HFCVICEKQF  60
SSGKAYGGHV RIHSTEYNIK GKMKKTRMKI MKKKRKIGLL KKEKEKEIDL IRADVEGKIR  120
CCLCGKEFQT MHSLFGHMRR HPDRSWKGIR PPPPPEKFNL SYGDDDDVDD DEDEDAMSRS  180
IMMSDDVPED VQEAACILMM LSYASSNYWA GIKKAMESPK SEVRSPSCYK DDKGKDEVLG  240
DGGMDDKKSL IVDMNIKMKV NSPRDEDKRS LGFDLNQPPY HEDHPDSCWN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18394KKTRMKIMKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap481569
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0051680.0AC005168.3 Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880847.10.0uncharacterized protein LOC9316914
TrEMBLD7LFE40.0D7LFE4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__629__AT2G26940.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-118C2H2 family protein