PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 481325
Common NameARALYDRAFT_481325
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 1610aa    MW: 182342 Da    PI: 8.9385
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
481325genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.41.1e-1218861390
            TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
      B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
            ++ +++p +f+ ++ +g   +  +l+  d s r+W+vk+  + ++    +t+GW++Fv an+ + gD+vvF+++g+  f
  481325 18 TH-FMIPEDFFLKYiEGT--SFAELK-SDVSDRTWKVKM--SDRR----ITDGWEDFVVANDFRIGDVVVFRYVGDLVF 86
            33.89*****99996443..444566.7799********..5555....9**********************9986444 PP
2B362.37.9e-20132220393
             EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
      B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
              +l+++ +l+ + l+lp +f++++g+   ++ +++l+d   rsW + l+++ +s ++++++GW++F+++ng k+gDf++Fkl+g+ ++  lv
  481325 132 VALITALNLTIDTLYLPLHFTSSNGLTR-KNSEIVLTDGGERSWVLDLRFDESSHTFYISRGWRNFCDENGQKAGDFFMFKLVGNgEK--LV 220
             567788889999************9986.556***************************************************97333..33 PP
3B3551.5e-17268358197
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
             f++ ++p+d+ + grl+l+ +f++e+g++k++  ++ l d++gr+W  +l    ++g++ l+kGWk+Fvkan L++g ++ +k  + +e+++v++++
  481325 268 FVTFTLPPDYARIGRLSLSAPFVRENGINKPG--EICLLDKHGRKWLTNLL-LDSKGTMSLGKGWKDFVKANSLETGFTLKLK--W-EETTPVLSLC 358
             778889*********************99766..8***************5.55556789*****************998888..6.6677888777 PP
4B357.72.2e-183804641197
             HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
             l  +  +lp +f++++g+  ++  +++l+d   rsWe+ l+++ +s+++++++GW++F+++ng k+g f++Fkl+g+ +++lv++++
  481325 380 LFMDTKYLPPHFTSSNGLTRKC-HKIVLRDGGERSWELDLKFNESSDTFYISQGWRNFCDENGQKAGGFFMFKLVGN-GETLVLSFR 464
             4456689*********999766.5***************************************************95.444555544 PP
5B353.15.7e-176587361798
             E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             +l+k f++e++++k++  ++tl  ++g + + +l ++k+ g++ l++GWk+Fvk+ngLk+gD++++kl++ +++++v++++ 
  481325 658 RLSKIFTRENDINKPG--KITLLGKDGIKQQTNLLFDKTNGSMSLGSGWKDFVKDNGLKTGDSFTLKLIW-EDQTPVLSLCP 736
             58899*****999766..7***************9***********************************.78889999986 PP
6B349.57.7e-16805896499
             E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
              ++++++ k++rl+l+ +fa+e++++k++  t+ l d++g +  ++l+ + k+g++ l+kGWkeF++an++k g++++ kl++ +++ ++++++r+
  481325 805 LTITPSSVKRDRLILSAQFARENNINKPG--TIYLLDRDGTKSLINLQ-QDKRGTMSLGKGWKEFAEANDIKLGESFMMKLVW-EGTIPMLSLLRT 896
             567888999999***********999766..8***************5.44445689*************************9.666678777765 PP
7B355.41.1e-179301020599
              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3    5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99  
               +++   ks+ l+l  +fa+e++++k++  tl l d++g +W  +++ r ++g++ l++GWkeF++ n+Lk gD++  +l++ +++++ ++++r+
  481325  930 ALTPEDVKSCKLILTAQFARENNINKPG--TLYLLDRDGTKWLTTVK-RDNKGTMSLGNGWKEFAETNDLKLGDSFRMELIW-EDTTPILSLLRT 1020
              55666777889***********999766..8***************5.55556789**************************.788898888875 PP
8B346.56.5e-1510541140594
              -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
      B3    5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94  
               +++   k + l+lp +f++++g++++ + ++tl  e+  +W  +l    ++g++ l++GW++F++ang+k g ++++++++++++++++
  481325 1054 ALTPEDVKACKLILPSQFMKANGISNKLG-KITLLGENKVEWPGYL--LSRDGTVALGNGWEGFCEANGVKLGHSFTLEFVNEQDTTPTI 1140
              44555556677***********8886555.****************..99999**************************99988888876 PP
9B336.21.1e-11114012121897
              --HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3   18 lpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97  
              +p  f+ +h  g +   +k+  l++  s  +W+vk+  ++++    lt+GWkeF+ a++L+ gD+v+F+  ++s+ +++v+++
  481325 1140 IPVVFFLKHieGRD--DQKMAELRSdASKITWKVKI--DGQR----LTDGWKEFALAHDLRIGDIVIFR--QESDLSFHVTLL 1212
              78888888875333..44567777658889******..8888....***********************..557777788776 PP
10B373.33e-2312531344497
              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3    4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97  
              + + +++l+ + + lp++f++e+g ++ +s +++l++e+grsW++kl+ + + g+++ ++GW +F++angL++gD+ +Fkl++ ++++lv++++
  481325 1253 AKVAPSSLSYDSMHLPRPFVRENGVVT-GSGEIVLMNEKGRSWKLKLRQKPSCGTVYVKGGWVSFCDANGLRAGDIYTFKLIQ-RGGTLVLRLL 1344
              456788899999***********9885.666****************99999999***************************9.5666777765 PP
11B3741.8e-2313611452497
              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3    4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97  
              + + +++l+ + l+lp++f++e+g++k+++ +++l++e+g+sW++ l+ +k+ g+ ++++GW++F++angL++g +++Fkl++ ++++lv++++
  481325 1361 ANVAPSSLRYDTLYLPRRFMRENGLDKRCG-KMILMNEKGKSWTLDLKQKKSCGTSLIKRGWSSFCRANGLRAGSIITFKLIK-KGGNLVLRLL 1452
              5678899999*****************998.999*************99999999**************************99.8888888775 PP
12B353.73.7e-1715091606199
              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99  
              f++ ++++++  ++ l+lp +f++ +g++  e++++tl d++g +W  +l+  + ks+r  +++GW++F +an +k++++++++l++++++++ +k+++k
  481325 1509 FVTLTLTPYNILRSVLRLPIPFTRMNGIN--EDTKMTLLDKHGTKWLTTLRLvDYKSKRLRMAGGWQGFIQANCVKANESIMLELIWEEDTSCILKFCSK 1606
              677788999999999***********999..6679***************8889999**********************************9***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.716594IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-16598IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-12689No hitNo description
Gene3DG3DSA:2.40.330.101.7E-15694IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.4E-19894IPR003340B3 DNA binding domain
PfamPF023622.4E-81883IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-19122224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-19127223IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.495130226IPR003340B3 DNA binding domain
CDDcd100171.13E-17130223No hitNo description
PfamPF023624.6E-18131221IPR003340B3 DNA binding domain
SMARTSM010198.9E-27131227IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-18261357IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-19264357IPR015300DNA-binding pseudobarrel domain
CDDcd100172.74E-16266355No hitNo description
PfamPF023623.2E-16268358IPR003340B3 DNA binding domain
SMARTSM010191.6E-29268361IPR003340B3 DNA binding domain
PROSITE profilePS5086313.31268363IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-17363466IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.128370466IPR003340B3 DNA binding domain
SMARTSM010192.8E-21371467IPR003340B3 DNA binding domain
PfamPF023621.7E-16381464IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-17385466IPR015300DNA-binding pseudobarrel domain
CDDcd100171.87E-16386465No hitNo description
SMARTSM010198.4E-25648738IPR003340B3 DNA binding domain
SuperFamilySSF1019361.49E-18657742IPR015300DNA-binding pseudobarrel domain
PfamPF023625.9E-16658737IPR003340B3 DNA binding domain
CDDcd100173.12E-15658736No hitNo description
PROSITE profilePS5086310.87659738IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-17659743IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-22793894IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-18798896IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-23802897IPR003340B3 DNA binding domain
PROSITE profilePS5086312.675802897IPR003340B3 DNA binding domain
PfamPF023621.9E-14804895IPR003340B3 DNA binding domain
CDDcd100171.86E-13806895No hitNo description
Gene3DG3DSA:2.40.330.105.8E-319161017IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-199241020IPR015300DNA-binding pseudobarrel domain
PfamPF023625.3E-169261019IPR003340B3 DNA binding domain
SMARTSM010194.0E-249261021IPR003340B3 DNA binding domain
PROSITE profilePS5086314.4529261021IPR003340B3 DNA binding domain
CDDcd100171.58E-169311019No hitNo description
Gene3DG3DSA:2.40.330.102.3E-1710401134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-1610461134IPR015300DNA-binding pseudobarrel domain
PfamPF023628.3E-1410501140IPR003340B3 DNA binding domain
SMARTSM010193.2E-1610501136IPR003340B3 DNA binding domain
PROSITE profilePS5086311.68810501148IPR003340B3 DNA binding domain
CDDcd100173.71E-1310551133No hitNo description
SMARTSM010195.8E-911371215IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-1311391222IPR015300DNA-binding pseudobarrel domain
CDDcd100176.18E-911391212No hitNo description
Gene3DG3DSA:2.40.330.102.8E-2111431229IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.46111681215IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-2012451341IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2012491346IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-2112501345No hitNo description
PROSITE profilePS5086316.56712501347IPR003340B3 DNA binding domain
SMARTSM010194.4E-3112511347IPR003340B3 DNA binding domain
PfamPF023621.2E-2112521344IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-2213511448IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-2013561455IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-2013581452No hitNo description
PROSITE profilePS5086316.25713581455IPR003340B3 DNA binding domain
SMARTSM010191.8E-2813591455IPR003340B3 DNA binding domain
PfamPF023629.2E-2213601452IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-1715011605IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-1715031604IPR015300DNA-binding pseudobarrel domain
CDDcd100173.01E-1115081604No hitNo description
PfamPF023626.1E-1615091606IPR003340B3 DNA binding domain
PROSITE profilePS5086312.68915091606IPR003340B3 DNA binding domain
SMARTSM010192.3E-2415091607IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1610 aa     Download sequence    Send to blast
MATFYPQFFH TLVPSFLTHF MIPEDFFLKY IEGTSFAELK SDVSDRTWKV KMSDRRITDG  60
WEDFVVANDF RIGDVVVFRY VGDLVFHVSN LGPNYSEIQD NEEVPREKKA KTNSGEAEAV  120
SSSSSADNSC FVALITALNL TIDTLYLPLH FTSSNGLTRK NSEIVLTDGG ERSWVLDLRF  180
DESSHTFYIS RGWRNFCDEN GQKAGDFFMF KLVGNGEKLV LSFQNIARED SKDECSSLDS  240
LMDIEKKKYS AKRRGSPYSS YSPSHKQFVT FTLPPDYARI GRLSLSAPFV RENGINKPGE  300
ICLLDKHGRK WLTNLLLDSK GTMSLGKGWK DFVKANSLET GFTLKLKWEE TTPVLSLCYA  360
ESNSDREQEE FSKAIEKRSL FMDTKYLPPH FTSSNGLTRK CHKIVLRDGG ERSWELDLKF  420
NESSDTFYIS QGWRNFCDEN GQKAGGFFMF KLVGNGETLV LSFRPTKSIN DGRQRYCSEA  480
SRRESVATKL SSEEENITWE GSKDECSTLE SLMEKEKKKY SLKPRGSPHS SYSPCHKRFV  540
TFTLPPDYAR IGRLVSLSET TLDSISFDAC LFGFCSNIYR VFRHRSLGRM ALTSLVRYFF  600
WINMVEGDTS NRDKINNNEN NKDESRSWER KKNHPKWRDS TPSTQKQYVT LTITPFRRLS  660
KIFTRENDIN KPGKITLLGK DGIKQQTNLL FDKTNGSMSL GSGWKDFVKD NGLKTGDSFT  720
LKLIWEDQTP VLSLCPAECS IDREAGGTNQ KKSLPIEPSI CTKVSKDVNI KEKNNKEESR  780
SVDRERNHLR ETDVTPSSQK HVVTLTITPS SVKRDRLILS AQFARENNIN KPGTIYLLDR  840
DGTKSLINLQ QDKRGTMSLG KGWKEFAEAN DIKLGESFMM KLVWEGTIPM LSLLRTEFSS  900
SKANKKESIS SEPKSRDSSP IIKNRFVTPA LTPEDVKSCK LILTAQFARE NNINKPGTLY  960
LLDRDGTKWL TTVKRDNKGT MSLGNGWKEF AETNDLKLGD SFRMELIWED TTPILSLLRT  1020
KFSSSKSNKE ESISSEPKSR DSSQTIENRF VTLALTPEDV KACKLILPSQ FMKANGISNK  1080
LGKITLLGEN KVEWPGYLLS RDGTVALGNG WEGFCEANGV KLGHSFTLEF VNEQDTTPTI  1140
PVVFFLKHIE GRDDQKMAEL RSDASKITWK VKIDGQRLTD GWKEFALAHD LRIGDIVIFR  1200
QESDLSFHVT LLGPSCCEIQ YGSCLDEETN LEKKKNPNGE AETSSLGRSC FVAKVAPSSL  1260
SYDSMHLPRP FVRENGVVTG SGEIVLMNEK GRSWKLKLRQ KPSCGTVYVK GGWVSFCDAN  1320
GLRAGDIYTF KLIQRGGTLV LRLLPNEEAE SSSLDPSCFV ANVAPSSLRY DTLYLPRRFM  1380
RENGLDKRCG KMILMNEKGK SWTLDLKQKK SCGTSLIKRG WSSFCRANGL RAGSIITFKL  1440
IKKGGNLVLR LLTNEPKEED ECSEANEVES LSTDQESNEE SHDEKISRRK EKKGNLMWKA  1500
SSSPSENRFV TLTLTPYNIL RSVLRLPIPF TRMNGINEDT KMTLLDKHGT KWLTTLRLVD  1560
YKSKRLRMAG GWQGFIQANC VKANESIMLE LIWEEDTSCI LKFCSKVKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMap481325
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175140.0AK117514.1 Arabidopsis thaliana At2g24650 mRNA for unknown protein, complete cds, clone: RAFL17-15-N14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885753.10.0B3 domain-containing protein REM13 isoform X1
SwissprotP0CAP50.0REM13_ARATH; B3 domain-containing protein REM13
TrEMBLD7LIB20.0D7LIB2_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh2_kg.4__385__AT2G24650.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.10.0B3 family protein
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]