PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 480804
Common NameARALYDRAFT_480804
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 481aa    MW: 53785 Da    PI: 6.4395
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
480804genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-083053421954
               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
               Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
    480804 305 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 342
               554458******************************88 PP
2BELL126.69.1e-41167238172
    BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
             erqelq+k +kLls+l+eVd++Ykqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi
  480804 167 ERQELQSKLSKLLSILDEVDRNYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQI 238
             79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-70109236IPR006563POX domain
PfamPF075262.2E-45115235IPR006563POX domain
PROSITE profilePS5007111.564283346IPR001356Homeobox domain
CDDcd000865.93E-11286347No hitNo description
SMARTSM003895.9E-9286350IPR001356Homeobox domain
SuperFamilySSF466895.99E-17287353IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-27289352IPR009057Homeodomain-like
PfamPF059208.9E-18303342IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MATYYKTGSS EIYSRPEFVP GNAMSYTNSF SETFPREATN NVSASKEIQV LSSLGGASQM  60
VEIQDSGSWR DQEDNDRSRF PVMMRLGLSS QIETSRGTNN NEYATQVVSG FTRTIHNSKY  120
LKAAQELLDE AVNVKKALKQ FQPQGDKIDE VKEKNLQTNI AEIPQAERQE LQSKLSKLLS  180
ILDEVDRNYK QYYHQMQIVV SSFDVIAGCG AAKPYTALAL QTISRHFRCL RDAISGQILV  240
IRKTLGGEQD GSDGRGVGIS RLRNVDQQVR QQRALQRLGV MQPHTWRPQR GLPDSSVLVL  300
RAWLFEHFLH PYPKDSDKIM LARQTGLSRG QVSNWFINAR VRLWKPMVEE MYKEEFTDAL  360
EENDPNPSSE NTPEITDIQE QQTESSSNNG RVSSVPSSSI GQSTVARGGD RFMMVTDITR  420
NGSGGMSLTL GIQNSDSDVP MSGGIDNYEN TIPGTDLQYL NSRNHQHRLG SSQLLHDFVA  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14292350563Homeobox protein Meis2
3k2a_B1e-14292350563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap480804
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0567960.0AY056796.1 Arabidopsis thaliana At2g16400/F16F14.10 mRNA, complete cds.
GenBankBT0006090.0BT000609.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g16400/F16F14.10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886225.10.0BEL1-like homeodomain protein 7
SwissprotQ9SIW10.0BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLD7L1V50.0D7L1V5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__3505__AT2G16400.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.10.0BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]