PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 480722 | ||||||||
Common Name | ARALYDRAFT_480722, GBF5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 172aa MW: 19019 Da PI: 5.2045 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.6 | 2.4e-12 | 31 | 87 | 5 | 61 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ++ +r+ +NRe+ArrsR RK++ ++ L+ + +L++ N++ + l ++++ k ++ 480722 31 RKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILNSLTVTSQLYMKIQA 87 57899*********************************8877777666666666555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.6E-10 | 22 | 75 | No hit | No description |
SMART | SM00338 | 5.7E-16 | 27 | 91 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.197 | 29 | 92 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.4E-9 | 31 | 82 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.04E-12 | 31 | 82 | No hit | No description |
CDD | cd14702 | 2.09E-21 | 32 | 83 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 34 | 49 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 172 aa Download sequence Send to blast |
MASSSSTYRS SSSSDGGNNN PSDSVVTVDE RKRKRMLSNR ESARRSRMRK QKHVDDLTAQ 60 INQLSNDNRQ ILNSLTVTSQ LYMKIQAENS VLTAQMTELS TRLQSLNEIV DLVQSNGAGF 120 GVDQIDGCGF DDRTVGIDGY YDDMNMMSGV NHWGGSVYTN QPIMANDINM Y* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 30 | 51 | RKRKRMLSNRESARRSRMRKQK |
2 | 43 | 50 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to specific DNA sequences in target gene promoters. BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000250|UniProtKB:O65683, ECO:0000269|PubMed:29348240}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00267 | DAP | Transfer from AT2G18160 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 480722 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC007212 | 0.0 | AC007212.7 Arabidopsis thaliana chromosome 2 clone F8D23 map PhyB, complete sequence. | |||
GenBank | AK230244 | 0.0 | AK230244.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-13-A15. | |||
GenBank | AY037216 | 0.0 | AY037216.1 Arabidopsis thaliana At2g18160/F8D23.6 mRNA, complete cds. | |||
GenBank | AY133545 | 0.0 | AY133545.1 Arabidopsis thaliana At2g18160/F8D23.6 mRNA, complete cds. | |||
GenBank | BT000700 | 0.0 | BT000700.1 Arabidopsis thaliana clone RAFL08-13-K01 (R11176) putative bZIP transcription factor (At2g18160) mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020888357.1 | 1e-123 | bZIP transcription factor 2 | ||||
Swissprot | Q9SI15 | 1e-122 | BZIP2_ARATH; bZIP transcription factor 2 | ||||
TrEMBL | D7LB86 | 1e-121 | D7LB86_ARALL; G-box binding factor 5 | ||||
STRING | fgenesh2_kg.3__3423__AT2G18162.1 | 1e-122 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM501 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G18160.1 | 1e-107 | basic leucine-zipper 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 480722 |
Entrez Gene | 9322218 |
Publications ? help Back to Top | |||
---|---|---|---|
|