PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 479837
Common NameARALYDRAFT_479837, ARALYDRAFT_497440
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 140aa    MW: 16258.6 Da    PI: 8.8176
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
479837genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-201970256
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
            +++GVr+++ +g+++AeIrdps ng  +r +lg+f taeeAa+a+++a+ +l+g+
  479837 19 RFRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAYNLRGH 70
            69*******.**********98887..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.16E-181878No hitNo description
SuperFamilySSF541711.63E-231978IPR016177DNA-binding domain
SMARTSM003801.4E-351983IPR001471AP2/ERF domain
PROSITE profilePS5103224.6191977IPR001471AP2/ERF domain
PfamPF008471.1E-141970IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-311979IPR001471AP2/ERF domain
PRINTSPR003673.6E-112031IPR001471AP2/ERF domain
PRINTSPR003673.6E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MESSNRRSNN QSQDDKQARF RGVRRRPWGK FAAEIRDPSR NGARLWLGTF ETAEEAARAY  60
DRAAYNLRGH LAILNFPNEY YSRMDDYSLR PPYASSSSSS SSSGSTSTNA SRQNQREVFE  120
FEYLDDRVLE ELLDSEERKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-331712812114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap479837
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256081e-176AB025608.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15.
GenBankAJ5803771e-176AJ580377.1 Arabidopsis thaliana mRNA for putative ethylene responsive element binding protein.
GenBankCP0026861e-176CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002862443.13e-97ethylene-responsive transcription factor ERF098
RefseqXP_002885560.13e-97ethylene-responsive transcription factor ERF098
SwissprotQ9LTC53e-75ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLD7L3947e-96D7L394_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.3__2538__AT3G23230.11e-96(Arabidopsis lyrata)
STRINGfgenesh2_kg.471__1__AT3G23230.11e-96(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-63ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]