PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

479835

Common Name

ARALYDRAFT_479835

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 319aa MW: 35370.4 Da PI: 4.8935

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
479835	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.6e-11	164	211	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f L ++l + + +K +K++iL A++ +++L 479835 164 TKACREKLRREKLNDKFMDLSSVLEPG---RTPKTDKSAILNDAIRVVNQL 211 6789********************8...8**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-12	158	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.29E-8	158	212	No hit	No description
PROSITE profile	PS50888	12.652	160	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-8	164	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-9	166	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.9E-12	167	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MYQSIDDDDD LLAALCFDQS NGVVDPYAYI QTNEDNIFQD FGSCGLNLQP QQEQFDSFSG 60 NLEQVCSFRG ENNGVVYSSS IGSAQLDWAA SFSGVLQQET HQVCGFRGQN DDSAANHLQQ 120 EQGQVCNGVV EINSSSSVGG VKEELEHGLS INRGRNGSCN KPGTKACREK LRREKLNDKF 180 MDLSSVLEPG RTPKTDKSAI LNDAIRVVNQ LRGEAHELKE TNQKLLEEIK NLKAEKNELR 240 EEKLVLKADK EKMVQQLKSM AFPSPGFMPS QHPVAFHPNN MPVYSGYGYY PPNMPMWSPL 300 PPADRDTSRD HKNLPPVA*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00372	DAP	Transfer from AT3G23210	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	479835

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY099674	0.0	AY099674.1 Arabidopsis thaliana unknown protein (At3g23210) mRNA, complete cds.
GenBank	AY128853	0.0	AY128853.1 Arabidopsis thaliana unknown protein (At3g23210) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020889077.1	0.0	transcription factor bHLH34
Swissprot	Q9LTC7	0.0	BH034_ARATH; Transcription factor bHLH34
TrEMBL	D7L392	0.0	D7L392_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.3__2536__AT3G23210.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4026	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	479835
Entrez Gene	9321625

Publications ? help Back to Top
Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]