PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 479653
Common NameARALYDRAFT_479653
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 375aa    MW: 41435.3 Da    PI: 6.9038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
479653genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08286326954
             HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
              r+RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  479653 286 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 326
             69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.123277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-13282342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.46E-11283331No hitNo description
SMARTSM003535.9E-13283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-12285340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-6286326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEGLESVYAQ AMYGMTRESK IMEHHQGSDL IWGGNELMAR ELCSSSSFHH QLINPNLSSC  60
FMSDLGVIGE IQQQQHVGNR ASSIDPSSLD CLLSATSNSN NTSTEDDEGI SVLFSDCQTL  120
WSFGGVSSAE SENREVTNET TTTIKPKSLK RNRGGDGGTT ETTTTTTTKP KYVKRNRGDE  180
TGSHFSLLHP QDDSEKGGFK LIYDENQSKS KKPRTEKERG GSSNISFQHS TCLSDNVEPD  240
AEAIAQMKEM IYRAAAFRPV NFGLEIVEKP KRKNVKISTD PQTVAARQRR ERISEKIRVL  300
QTLVPGGTKM DTASMLDEAA NYLKFLRAQV KALENLRPKL DQTNLSFSSA PSFPLFHPSF  360
LPLQNPNQIH HPGC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286291RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMap479653
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886170.0AF488617.1 Arabidopsis thaliana clone bHLH087 putative bHLH transcription factor mRNA, complete cds.
GenBankAP0013050.0AP001305.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9.
GenBankBT0203640.0BT020364.1 Arabidopsis thaliana At3g21330 gene, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889299.10.0transcription factor bHLH87
SwissprotQ8S3D20.0BH087_ARATH; Transcription factor bHLH87
TrEMBLD7L0R60.0D7L0R6_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.3__2354__AT3G21330.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]