PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 479554 | ||||||||
Common Name | ARALYDRAFT_479554 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25256.3 Da PI: 8.3698 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.5e-19 | 16 | 66 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrdp + + r++lg+f++a eAa+a++ a+++l+g 479554 16 PRYRGVRKRP-WGRFAAEIRDPLK---KSRVWLGTFDSAIEAARAYDTAARNLRG 66 68********.**********743...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-12 | 16 | 66 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.07E-31 | 16 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 17 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-37 | 17 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-21 | 17 | 76 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.143 | 17 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-10 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-10 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
VGPALPVTAG GSVKEPRYRG VRKRPWGRFA AEIRDPLKKS RVWLGTFDSA IEAARAYDTA 60 ARNLRGPKAK TNFPIDCSPS SPLQPLNYLQ NQNLCSPAAN QNQIDPFMDH RLYGGGNFQE 120 QQQIISRPAS SSMSSTVKSC SGPRPMEAAA ASSSVAKPLH AIKRYPRTPP VAPEDCHSDC 180 DSSSSVIDDG DDIASSSSRR KPPFQFDLNF PPLDGVDLFA GGTDDLHCTD LRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 10 | 83 | 7 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00366 | DAP | Transfer from AT3G20310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 479554 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB024036 | 0.0 | AB024036.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQC12. | |||
GenBank | AB032201 | 0.0 | AB032201.1 Arabidopsis thaliana mRNA for ERF transcription factor 7, complete cds. | |||
GenBank | AK228460 | 0.0 | AK228460.1 Arabidopsis thaliana mRNA for putative ethylene responsive element binding factor, complete cds, clone: RAFL15-05-J12. | |||
GenBank | AY037254 | 0.0 | AY037254.1 Arabidopsis thaliana AT3g20310/MQC12_6 mRNA, complete cds. | |||
GenBank | AY094001 | 0.0 | AY094001.1 Arabidopsis thaliana AT3g20310/MQC12_6 mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020887968.1 | 1e-132 | ethylene-responsive transcription factor 7 | ||||
Swissprot | Q9LDE4 | 1e-131 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | D7LAY3 | 1e-170 | D7LAY3_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | fgenesh2_kg.3__2255__AT3G20310.1 | 1e-171 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 1e-110 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | 479554 |
Entrez Gene | 9321431 |
Publications ? help Back to Top | |||
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