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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
479472 |
| Common Name | ARALYDRAFT_479472 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
C2H2 |
| Protein Properties |
Length: 269aa MW: 29348.3 Da PI: 9.0317 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 479472 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.4 | 0.00011 | 105 | 127 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
ykC+ Cgk F++ L H +H
479472 105 YKCSVCGKAFPSYQALGGHKASH 127
9***********99999998887 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0009793 | Biological Process | embryo development ending in seed dormancy |
| GO:0010200 | Biological Process | response to chitin |
| GO:0042538 | Biological Process | hyperosmotic salinity response |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 269 aa
Download sequence Send
to blast |
MALEAMKSPT SFTRIETKED LMNDAVFIEP WLKRKRSKRQ RSHSPSSSSS SPPRSRPKSQ 60
NQDLTEEEYL ALCLLMLAKD QPSQTRFHQQ SQSLTPPPES KNLPYKCSVC GKAFPSYQAL 120
GGHKASHRIK PPTVISTADD STAPTISVVG EKHPIAASGK IHECSICHKV FPTGQALGGH 180
KRCHYEGNLG GGGGSKSISH SGSVSSTVSE ERSHRGFIDL NLPALPELSL HNNPIVDEEI 240
LSPLTGKKPL LLTDHDQVIK KEDFSLRI*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415, ECO:0000269|PubMed:22709441}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA), ethylene, salt, cold, dehydration and the monovalent and divalent cations Li(+), Na(+), K(+), Cs(+), Ca(2+) and Mg(2+). {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB030730 | 0.0 | AB030730.1 Arabidopsis thaliana AZF2 gene for Cys2/His2-type zinc finger protein 2, complete cds. |
| GenBank | AF250337 | 0.0 | AF250337.1 Arabidopsis thaliana zinc finger protein AZF2 (AZF2) mRNA, complete cds. |
| GenBank | AP000417 | 0.0 | AP000417.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MMB12. |
| GenBank | BT003816 | 0.0 | BT003816.1 Arabidopsis thaliana clone C105170 putative zinc finger protein (At3g19580) mRNA, complete cds. |
| GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
