PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 478803
Common NameARALYDRAFT_478803
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRF
Protein Properties Length: 399aa    MW: 45235.3 Da    PI: 8.2129
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
478803genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.43e-2481125145
     WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
             d+epgrCrRtDGKkWRCsr++++++k+CE+H+hrgr+r rks ++
  478803  81 DPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLDQ 125
             79***************************************9875 PP
2QLQ62.21.3e-211651237
     QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
            +FT++Q+++L++Q+l+yKy+++++PvPpeL++ i++
  478803 16 PFTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRR 51
            9*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.4E-141551IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.4161651IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.7E-161650IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.29781125IPR014977WRC domain
PfamPF088791.8E-2082122IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR  60
LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE AYPDSKYCEK HMHRGRNRAR  120
KSLDQNQTRT TPLTSPSLSF HNNNNPSPTL SSSSSSSTTY SASSSSMDAY SNSNRFGVGG  180
SSSHTRGYFN SHSLDYPYPS TSPKQQQQPL HHASALSLHQ NTTSTSQFNV LASPTDHKDF  240
RYFQGIGERV GVGERTFFPE ASRSFQDSPY HHHQQPLTTV MNDPYHHCST DHKIDHHHHT  300
YSSSSSSQQH LHHDQEHDHR QQQQQCFVLG ADMFNKPTRS VLTNSSRQDQ NQEEEEKDSS  360
ESSKKSLHHF FGEDWAQNKN SSDSWLDLSS HPRLDTGN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap478803
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1026380.0AY102638.1 Arabidopsis thaliana transcription activator (GRF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885866.10.0growth-regulating factor 5 isoform X2
SwissprotQ8L8A60.0GRF5_ARATH; Growth-regulating factor 5
TrEMBLD7L2A70.0D7L2A7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__1504__AT3G13960.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.10.0growth-regulating factor 5