PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 478652 | ||||||||
Common Name | ARALYDRAFT_478652 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 304aa MW: 35270.4 Da PI: 8.1923 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157 | 8e-49 | 22 | 150 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvg 101 pGfrFhPtdeelv +yL kkv kk +++e+++++diyk++PwdLp + +++eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+++s +++++g 478652 22 LPGFRFHPTDEELVGYYLSKKVLLKKpSKIDEIVSQIDIYKFDPWDLP-RSRNTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSDgsNKAVIG 123 59*******************887764788888***************.5567789**************************************9767777** PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 lkktLv+y g+a kg+ktdW+mhe+rl 478652 124 LKKTLVYYLGSAGKGSKTDWMMHEFRL 150 *************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-50 | 21 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.87 | 21 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-25 | 23 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MEKMIESRDN TRESEDEEVL KLPGFRFHPT DEELVGYYLS KKVLLKKPSK IDEIVSQIDI 60 YKFDPWDLPR SRNTEKESYF FCKRGRKYRN SIRPNRVTGS GFWKATGIDK PIYSDGSNKA 120 VIGLKKTLVY YLGSAGKGSK TDWMMHEFRL PTANDTIPGG PTHSNPTPTS LLHAEVWTLC 180 RIFKRNVSSR KYTPDWRELA NGKRVKQQQS NYQEAYYINF GDYESSSTNV INVREGEGNY 240 ERSVFQLQQT PHQHQNKPIL MDTTHVDNSF QHFSNDNIHE ETYENWDELR SVVEFAFPPS 300 SLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-43 | 23 | 191 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-43 | 23 | 191 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-43 | 23 | 191 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-43 | 23 | 191 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-43 | 23 | 191 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-43 | 23 | 191 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-43 | 23 | 191 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-43 | 23 | 191 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-43 | 23 | 191 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-43 | 23 | 191 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-43 | 23 | 191 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-43 | 23 | 191 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-43 | 23 | 191 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-43 | 23 | 191 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00353 | DAP | Transfer from AT3G12910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 478652 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026645 | 1e-148 | AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6. | |||
GenBank | CP002686 | 1e-148 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002882795.1 | 0.0 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 4e-72 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | D7L0L5 | 0.0 | D7L0L5_ARALL; Transcription factor | ||||
STRING | fgenesh2_kg.3__1353__AT3G12910.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 0.0 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | 478652 |
Entrez Gene | 9318861 |