PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 478627
Common NameARALYDRAFT_478627, HUA1
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 520aa    MW: 57088.8 Da    PI: 7.4916
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
478627genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-11174197326
              S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
              ++ C ++++t tCk+Gd+CkF H+
   478627 174 EKDCTHYMQTRTCKFGDSCKFDHP 197
              678********************8 PP
2zf-CCCH34.14.5e-11223249127
              --S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
              ++++ C+++ +t  CkyG+rCkF+H++
   478627 223 PGEPDCPYYIKTQRCKYGSRCKFNHPR 249
              5789*********************96 PP
3zf-CCCH375.6e-12268292327
              S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
              ++ C f+++tG Ck+G +CkF+H++
   478627 268 EPMCTFYMKTGKCKFGLTCKFHHPK 292
              689********************96 PP
4zf-CCCH38.71.7e-12338364127
              --S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
              ++++ C+f+++tG CkyG++C+++H++
   478627 338 PGEVDCPFYLKTGSCKYGATCRYNHPE 364
              57899********************96 PP
5zf-CCCH40.25.6e-13419443226
              -S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
              ++++C+++++tG+Ck+G+rC+F+H+
   478627 419 GQSECDYYMKTGECKFGERCRFHHP 443
              7899********************8 PP
6zf-CCCH41.42.3e-13475497527
              --SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
              +C+++++tGtCkyG++CkF H+p
   478627 475 NCPYYMKTGTCKYGATCKFDHPP 497
              6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.432171199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5172198IPR000571Zinc finger, CCCH-type
SMARTSM003560.0041173198IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9174197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4177196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.018222250IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-5222249IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7224249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6227252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-6228251IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4265292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3265293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6268293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5270291IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-9271292IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554337365IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10339364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5341365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4343364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047417445IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-6417444IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-7418447IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10419443IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-6423444IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389470498IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6470497IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5475497IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-11475497IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5476495IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MAHRQLYSYA LQPSYAAASA VSPAPPPQQQ PPKTGLSSLY GSSADHYYPD TTFRFLARDG  60
SEALSNYSGT LASSSAMYHH LPNTTASHLA YPQLLQHQEA AWPPGVEVPG AASAVEPLPP  120
GVKRTSEALY YPTLLGAHNT IGQTEAWYTT DYFTKRPKLE STSHLPIYPQ RAGEKDCTHY  180
MQTRTCKFGD SCKFDHPIWV PEGGIPDWKE APVVPNEEYP ERPGEPDCPY YIKTQRCKYG  240
SRCKFNHPRE EAAVSVETQD ALPERPSEPM CTFYMKTGKC KFGLTCKFHH PKDIQVPSSS  300
QDNGSSVGLT SEPDATNNPH VTFTPALYHN SKGLPVRPGE VDCPFYLKTG SCKYGATCRY  360
NHPERTAFIP QATGINYSLV SSNTANLNLG MVTPATSFYQ TLTQPTLGAL SATYPQRPGQ  420
SECDYYMKTG ECKFGERCRF HHPADRLSAT SNQASQQPNV KLSLAGYPRR EGALNCPYYM  480
KTGTCKYGAT CKFDHPPPGE VMAKTTSEAD AAGATDTTQ*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap478627
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0243570.0AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884918.10.0zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLD7L0J20.0D7L0J2_ARALL; Enhancer of ag-4 1
STRINGfgenesh2_kg.3__1328__AT3G12680.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)