PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 478379 | ||||||||
Common Name | ARALYDRAFT_478379 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 398aa MW: 42907.2 Da PI: 7.722 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00047 | 181 | 203 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H 478379 181 YQCKTCDRTFPSFQALGGHRASH 203 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 13 | 0.00032 | 260 | 282 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H 478379 260 HECGICGAEFTSGQALGGHMRRH 282 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.3E-12 | 180 | 205 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.47E-9 | 180 | 203 | No hit | No description |
SMART | SM00355 | 0.028 | 181 | 203 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.471 | 181 | 208 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 183 | 203 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.47E-9 | 255 | 282 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.2E-4 | 258 | 284 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.6E-11 | 259 | 284 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.93 | 260 | 284 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.047 | 260 | 282 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 262 | 282 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MEAAAEAVSA AREQSLILKG KRTKRQRPQS PIPFSIIPPL SSHEPDAEEE STSLISKEKS 60 LNDEINNNNN KNDNNTLIND VTSSSSASSS SNKNATLKAT ADEEDQDMAN CLILLAQGHS 120 LPHHQPQPHP QQQTRQLMIS YQESGNNNNA YRSSSRRFLE TPSSNGTTTN GGGGKAGYYV 180 YQCKTCDRTF PSFQALGGHR ASHKKPKAAT GLHSNHDHKK SIYDDAVSLH LNNVITTTPN 240 NNSNHRSLVA YGKASNNKVH ECGICGAEFT SGQALGGHMR RHRGAVVAAA AASTATVAVA 300 ATQATANTAL SLSPMSFDQM SDGPVQAPVK RARSAVVSLD LDLNLPAPED ENRVNGLSFA 360 SKQEHEQEHE QTQQKKQREE QKSLVLSSPP TLVDCHY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 478379 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC011560 | 0.0 | AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence. | |||
GenBank | ATAC013428 | 0.0 | AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020886159.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | D7L8Z4 | 0.0 | D7L8Z4_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.3__1080__AT3G10470.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2231 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10470.1 | 1e-158 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 478379 |
Entrez Gene | 9318740 |