PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 478095 | ||||||||
Common Name | ARALYDRAFT_478095 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | CO-like | ||||||||
Protein Properties | Length: 367aa MW: 40211.5 Da PI: 6.303 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.8 | 1.7e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C + H+ H++ 478095 4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44 6*****************************65677777765 PP | |||||||
2 | zf-B_box | 25.3 | 3.2e-08 | 46 | 94 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...........Htvvp 41 +C++++ ++++ C + ++ lC++C ++H++ H++++ 478095 46 LVCERCNAQPATVRCVEERVSLCQNCDWSGHNNnssssstspqqHKRQT 94 68*****************************888888888888888765 PP | |||||||
3 | CCT | 60.4 | 6e-21 | 309 | 352 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ 478095 309 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAG 352 99***************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.798 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.10E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 1.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.115 | 43 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.13E-5 | 47 | 76 | No hit | No description |
SMART | SM00336 | 1.2 | 48 | 95 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.0E-15 | 309 | 351 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.338 | 309 | 351 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC 60 VEERVSLCQN CDWSGHNNNS SSSSTSPQQH KRQTISCYSG CPSSSELASI WSFCLDLAGQ 120 SICEQEMGMM NIDDDGPTDN KNCNEDKKDV FVSIPETSSA AKGKSSSAKD VGVCEDDFYG 180 NLGMDEVDMA LENYEELFGT AFNPSEELFG HGGIDSLFQK HQTKAPEGGN SVHPAGSNDS 240 FMSSKTEPII CYTSKPAQSN ISFSGVTGES SAGDFQECGA SSSIQLSGEP PWYPPTSQEN 300 NACSHSVTRN NAVMRYKEKK KARKFDKRVR YASRKARADV RRRVKGRFVK AGEAYDYDPL 360 TPTRSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 478095 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK316934 | 0.0 | AK316934.1 Arabidopsis thaliana AT3G07650 mRNA, complete cds, clone: RAFL14-22-K23. | |||
GenBank | BT029490 | 0.0 | BT029490.1 Arabidopsis thaliana At3g07650 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020886391.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_020886392.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9SSE5 | 0.0 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | D7L6N1 | 0.0 | D7L6N1_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.3__796__AT3G07650.3 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 0.0 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | 478095 |
Entrez Gene | 9318608 |