PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 477989 | ||||||||
Common Name | ARALYDRAFT_477989 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GATA | ||||||||
Protein Properties | Length: 138aa MW: 15217.3 Da PI: 10.4797 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.8 | 3e-18 | 31 | 65 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk++ 477989 31 CAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRR 65 999*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.387 | 25 | 61 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 9.9E-14 | 25 | 77 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.19E-12 | 27 | 73 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.4E-15 | 29 | 65 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.21E-12 | 30 | 85 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 31 | 56 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.7E-16 | 31 | 65 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MESKLTSVDA IEEHSSSSSS NEGISNEKKS CAICGTSKTP LWRGGPAGPK SLCNACGIRN 60 RKKRRTLISN RSEDKKNKNH NRNPKFGDSL KQRLMELGRE VMMQRSTAEN QRRKKLGEEE 120 QAAVLLMALS YASSVYA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 477989 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY063926 | 0.0 | AY063926.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds. | |||
GenBank | AY091250 | 0.0 | AY091250.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020888043.1 | 5e-97 | GATA transcription factor 15 | ||||
Swissprot | Q8LG10 | 6e-89 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | D7L5Z2 | 2e-95 | D7L5Z2_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.3__690__AT3G06740.1 | 4e-96 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5050 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 1e-78 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | 477989 |
Entrez Gene | 9318557 |
Publications ? help Back to Top | |||
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