PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 477966 | ||||||||
Common Name | ARALYDRAFT_477966 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 218aa MW: 23824.6 Da PI: 12.2203 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.2 | 7.9e-05 | 160 | 194 | 16 | 55 |
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +N + L +l+P + +K s iLe+A++YI+ L+ 477966 160 VNRKVRVLGRLVPGC-----GKQSVPVILEEATDYIQALE 194 677777788888888.....9****************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.15E-9 | 141 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.103 | 144 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-7 | 159 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MASLISDIEP PTTDLVRRKK RSSVSSAASP STSAASVSGE SHARWRSEKQ QRIYSAKLIQ 60 ALQQVRLNSS AATSSSPTAQ KRGKAVREAA DRALAVSARG RTLWSRAILA NRIKLKFRKQ 120 KRPKTPTKIP SMTTVVNSSN RSRTRRVSVL RLNKKNIPDV NRKVRVLGRL VPGCGKQSVP 180 VILEEATDYI QALEMQVRAM NSLVQLLSSY GSAPPPI* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | bHLH transcription factor that binds DNA on specific sequence 5'-CANNTG-3' in target gene promoters (PubMed:24009530). Negatively regulates brassinosteroid signaling (PubMed:20023194). Together with BHLH148/RITF1, regulates the transcription of several genes involved in the detoxification of reactive oxygen species (ROS) generated by salt (NaCl) stress. Confers tolerance to salt and to the oxidative stress-inducing reagents hydrogen peroxide H(2)O(2) and methyl viologen (MV) (PubMed:24009530). {ECO:0000269|PubMed:20023194, ECO:0000269|PubMed:24009530}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 477966 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salt (NaCl) stress. {ECO:0000269|PubMed:24009530}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC020580 | 0.0 | AC020580.11 Arabidopsis thaliana chromosome 3 BAC F5E6 genomic sequence, complete sequence. | |||
GenBank | AY081288 | 0.0 | AY081288.1 Arabidopsis thaliana unknown protein (At3g06590) mRNA, complete cds. | |||
GenBank | AY088744 | 0.0 | AY088744.1 Arabidopsis thaliana clone 9391 mRNA, complete sequence. | |||
GenBank | AY093390 | 0.0 | AY093390.1 Arabidopsis thaliana unknown protein (At3g06590) mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020888482.1 | 1e-153 | transcription factor bHLH148 | ||||
Refseq | XP_020888484.1 | 1e-153 | transcription factor bHLH148 | ||||
Swissprot | Q9C8Z9 | 1e-106 | BH148_ARATH; Transcription factor bHLH148 | ||||
TrEMBL | D7L5J9 | 1e-151 | D7L5J9_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.3__667__AT3G06590.1 | 1e-152 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6157 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06590.2 | 5e-97 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 477966 |
Entrez Gene | 9318549 |
Publications ? help Back to Top | |||
---|---|---|---|
|