PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 477768
Common NameARALYDRAFT_477768
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 449aa    MW: 49220.7 Da    PI: 4.7379
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
477768genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573120.58.4e-38132230298
  DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
             lfqrlw++eDei lL+G++d+ ++++g+s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++fe+s+kiW++
  477768 132 LFQRLWTDEDEIELLRGFLDYmTTHRGSSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISRKIWNQ 230
             79*******************888999999999****************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.8E-34133229IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MTSDHRHADF SLESPDPEEG GVGDGGESDT DEDLRDNDDV VMPEANEAEA EDDDPEEEDL  60
NSPSLAMVST ISATAVVSRK PTATSSTGAV TVALPAGSAV PVSVIPVDSD PKWHRMTEIV  120
HQRPPIDDSR RLFQRLWTDE DEIELLRGFL DYMTTHRGSS SHPPDTAPFY EQIKSKLQLD  180
FNKNQLVEKL RRLKKKYRNV MSKISSGKEV FFKSPHDQST FEISRKIWNQ TGKIIGFEDN  240
NVMDFEETNN HHNTNGNYST FNSPSSNPSL ELDSENGVEK KLTMSSSSVS RKRSRSRIGK  300
IEEDNKPIIT PSDGQIPNAA SNVNLNETAA AVGIGGNLGV LIEETVKNCV SPVIKEMMNG  360
TTSMMMAAMG GGFPGGGGGH GFGSLSPMFT RPLNFGFGVE GGGNKAVADE RWRKQQILEL  420
EVYSRRLELV QEQIRTTLNE LKTMPSGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291296KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMap477768
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0701360.0AY070136.1 Arabidopsis thaliana AT3g04930/T9J14_12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882384.10.0probable transcription factor At3g04930
SwissprotQ9CAV70.0STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLD7L3040.0D7L304_ARALL; Transcription regulator
STRINGfgenesh2_kg.3__469__AT3G04930.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.10.0DNA-binding storekeeper protein-related transcriptional regulator