PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

477490

Common Name

ARALYDRAFT_477490

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 265aa MW: 28522.6 Da PI: 8.4902

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
477490	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.3	2.7e-29	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q ++e+++ + 477490 4 SCNGCRVLRKGCSEDCSIRPCLawiksPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKG 106 6***********************************************************************************************9998876 PP DUF260 99 e 99 e 477490 107 E 107 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.945	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-23	4	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH 60 LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV EAVMKGEPIK EIATDAATIG 120 QGPPLKIYDI RHISKDDNSA AAAATGSTDL KRAKTRRAKR VSTVEKQAES EGKSGEASHE 180 SSLSHQSEIV AAHEGESKES ESNVSEVLAF SPPTVQGSGE IKLDLTLGLE PVSRAYHVVP 240 VKKRRMGVFG TCQKESTCKT ELML*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	477490

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY086061	0.0	AY086061.1 Arabidopsis thaliana clone 20907 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020887334.1	0.0	LOB domain-containing protein 41
Swissprot	Q9M886	0.0	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	D7KZI6	0.0	D7KZI6_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.3__191__AT3G02550.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7721	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-179	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	477490
Entrez Gene	9320393