PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 477432
Common NameARALYDRAFT_477432
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 355aa    MW: 40586.2 Da    PI: 9.6594
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
477432genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055301323123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++C+ C+k+Fs+   L  H+  H
   477432 301 HRCGLCDKVFSTYQALGGHQTFH 323
              79*************99999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.2877100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.61477105IPR007087Zinc finger, C2H2
PROSITE patternPS00028079100IPR007087Zinc finger, C2H2
SuperFamilySSF576674.24E-5301326No hitNo description
PROSITE profilePS501579.411301328IPR007087Zinc finger, C2H2
SMARTSM003550.31301323IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-7301323IPR007087Zinc finger, C2H2
PROSITE patternPS000280303323IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEEHQEFEKP IFEFHPKKLR NSRVSRNLTK KTGFRESMNH YKELSCNYGL RENPKKTQKS  60
LLDHRLCTRR RNKKSLIRCK ECGKGFLYEK CLLNHRQVTH SEESMRKSLF CSFSVVQRRK  120
RSKRVSRYKK ILSRFSVSSS SCTMFPVSVD DGGLLEVAES LILLSMSGGK FLNALELSGR  180
ALDSNPREFE HVLLRNELKH FGEALDSNSV VNLRKDGDFE DGFLSNEQKK PVGISRASVG  240
TSKELSGYLA DKKAREEDES GQQKLVEAGI LREETDNEHK LVCQETAFED SISGFEMNIE  300
HRCGLCDKVF STYQALGGHQ TFHRMRNKSK IEAGAGINNG SVTLTHKCRV CSRLF
Cis-element ? help Back to Top
SourceLink
PlantRegMap477432
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0082610.0AC008261.5 Arabidopsis thaliana chromosome III BAC T4P13 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888458.10.0uncharacterized protein LOC9320364
TrEMBLD7LAJ90.0D7LAJ9_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.3__133__AT3G01030.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.15e-31C2H2 family protein