PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

477109

Common Name

ARALYDRAFT_477109

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 340aa MW: 37612.2 Da PI: 7.8918

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
477109	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	9.8e-34	25	79	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl 477109 25 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 79 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.4E-32	22	80	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.801	22	82	IPR017930	Myb domain
SuperFamily	SSF46689	1.63E-16	24	80	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	25	80	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-8	27	77	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-21	120	160	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010088	Biological Process	phloem development
GO:0010089	Biological Process	xylem development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MNGSYENRAM CVQGDSGLVL TTDPKPRLRW TVELHERFVD AVAQLGGPDK ATPKTIMRVM 60 GVKGLTLYHL KSHLQKFRLG KQPHKEYGDH STKEGSRASA MDIQRNVASS SGMMSRNMNE 120 MQMEVQRRLH EQLEVQRHLQ LRIEAQGKYM QSILERACQT LAGENMAAAT AAAAVGGGYK 180 GNLGSSSLSA AVGPPPHPLS FPPFQDLNIY GNTTDQVLDH HNFHHQNIEN HFTSNNAADT 240 NIYLGKKRPN PNFGNDVRKG LLMWSDQDHD LAANQSIDDE HRIQIQMATH ASTDLDSLSE 300 IYERKSGLSG DEGNNGGKLL ERPSPRRSPL SPMMNPNGGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	25	81	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	25	81	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	25	81	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	25	81	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	477109

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK316719	0.0	AK316719.1 Arabidopsis thaliana AT1G79430 mRNA, complete cds, clone: RAFL09-57-C07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020891736.1	0.0	myb family transcription factor APL
Swissprot	Q9SAK5	0.0	APL_ARATH; Myb family transcription factor APL
TrEMBL	D7KWH8	0.0	D7KWH8_ARALL; Uncharacterized protein (Fragment)
STRING	fgenesh2_kg.2__2239__AT1G79430.2	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5044	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	0.0	G2-like family protein

Link Out ? help Back to Top
Phytozome	477109
Entrez Gene	9323850

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]