PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 477018 | ||||||||
Common Name | ARALYDRAFT_477018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | STAT | ||||||||
Protein Properties | Length: 669aa MW: 75723.7 Da PI: 5.6903 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 185.6 | 6.1e-58 | 221 | 340 | 1 | 121 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfleavsk 103 ldvvl+na+gqpv+kdvevvasLlyad+ lv +++++aeapLL++ +Gvefss drp+kll+Gr+sfklkisqLssk+dnrLf+ikf i++ k+ypfl+avs+ 477018 221 LDVVLSNAIGQPVHKDVEVVASLLYADT-LVEARMSEAEAPLLVRDEGVEFSSGDRPIKLLNGRSSFKLKISQLSSKSDNRLFWIKFGIRNAKDYPFLQAVSN 322 8**************************9.888899******************************************************************** PP STAT 104 pirCisrsrntrsssltk 121 pirCis s ++r++s+t 477018 323 PIRCISISPDVRPLSVTP 340 *************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 1.1E-6 | 24 | 147 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF49899 | 2.51E-8 | 29 | 166 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Pfam | PF13385 | 1.7E-6 | 30 | 147 | No hit | No description |
CDD | cd10338 | 7.57E-65 | 563 | 668 | No hit | No description |
Gene3D | G3DSA:3.30.505.10 | 3.9E-8 | 570 | 621 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 4.17E-11 | 571 | 659 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.478 | 574 | 668 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MAGVSTIETE KYSLLEDFSV DVEVDDEEYE SFSLCFWVYL LNSTTFPSTI IRQVHSDMSV 60 SAPFLVLDEN KKMMLLPLTL LHKEAPDPVD TSSWTQVPSV STKSKFPLQK WVHVGCEVSR 120 NFMRLFIDGN IEGEQFVTSL LTKNTNPKCP RKISLFSVGG DGYSVQGFIQ CAQVLPASDH 180 VEHHYMKDPP LLLSVNKSSS SGIKLDDDGV WQASCREIFS LDVVLSNAIG QPVHKDVEVV 240 ASLLYADTLV EARMSEAEAP LLVRDEGVEF SSGDRPIKLL NGRSSFKLKI SQLSSKSDNR 300 LFWIKFGIRN AKDYPFLQAV SNPIRCISIS PDVRPLSVTP KRLTNIDHLS STESPDLLHN 360 ASSVKRIRLG KESVSGSEES YQQCNSRPQT SRQFENGNGM RLHEEDNSST DSENSEMRYT 420 ISDSTIFRYC LGNIIDKSLL LKEITNNSSD DEVLEFANQV SLYSGCSHHS YQINMARELI 480 AEGTNAWILI SRNNQHVLWD NVVYEIEEHF MRISKCSSRS LTHQDFELLR RISGCYEYVT 540 QVNFEKMWCW LFPVAYSISR GLINGMWRSS SPKWIEGFIT KEEAEHSLQG QEPGTFILRF 600 PISRIWPHPD AGSLVVSYVG HDFALHHKQL KIDNMCESSE RYMDAKPLQD VLLAEPELSR 660 LGRIIRSH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 477018 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221532 | 0.0 | AK221532.1 Arabidopsis thaliana mRNA for Hypothetical protein, complete cds, clone: RAFL07-69-D06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020890440.1 | 0.0 | uncharacterized protein LOC9325260 | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | D7KVC1 | 0.0 | D7KVC1_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.2__2148__AT1G78540.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5205 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Link Out ? help Back to Top | |
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Phytozome | 477018 |
Entrez Gene | 9325260 |
Publications ? help Back to Top | |||
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