PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 477018
Common NameARALYDRAFT_477018
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family STAT
Protein Properties Length: 669aa    MW: 75723.7 Da    PI: 5.6903
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
477018genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT185.66.1e-582213401121
    STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfleavsk 103
             ldvvl+na+gqpv+kdvevvasLlyad+ lv +++++aeapLL++ +Gvefss drp+kll+Gr+sfklkisqLssk+dnrLf+ikf i++ k+ypfl+avs+
  477018 221 LDVVLSNAIGQPVHKDVEVVASLLYADT-LVEARMSEAEAPLLVRDEGVEFSSGDRPIKLLNGRSSFKLKISQLSSKSDNRLFWIKFGIRNAKDYPFLQAVSN 322
             8**************************9.888899******************************************************************** PP

    STAT 104 pirCisrsrntrsssltk 121
             pirCis s ++r++s+t 
  477018 323 PIRCISISPDVRPLSVTP 340
             *************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2001.1E-624147IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498992.51E-829166IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF133851.7E-630147No hitNo description
CDDcd103387.57E-65563668No hitNo description
Gene3DG3DSA:3.30.505.103.9E-8570621IPR000980SH2 domain
SuperFamilySSF555504.17E-11571659IPR000980SH2 domain
PROSITE profilePS5000110.478574668IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MAGVSTIETE KYSLLEDFSV DVEVDDEEYE SFSLCFWVYL LNSTTFPSTI IRQVHSDMSV  60
SAPFLVLDEN KKMMLLPLTL LHKEAPDPVD TSSWTQVPSV STKSKFPLQK WVHVGCEVSR  120
NFMRLFIDGN IEGEQFVTSL LTKNTNPKCP RKISLFSVGG DGYSVQGFIQ CAQVLPASDH  180
VEHHYMKDPP LLLSVNKSSS SGIKLDDDGV WQASCREIFS LDVVLSNAIG QPVHKDVEVV  240
ASLLYADTLV EARMSEAEAP LLVRDEGVEF SSGDRPIKLL NGRSSFKLKI SQLSSKSDNR  300
LFWIKFGIRN AKDYPFLQAV SNPIRCISIS PDVRPLSVTP KRLTNIDHLS STESPDLLHN  360
ASSVKRIRLG KESVSGSEES YQQCNSRPQT SRQFENGNGM RLHEEDNSST DSENSEMRYT  420
ISDSTIFRYC LGNIIDKSLL LKEITNNSSD DEVLEFANQV SLYSGCSHHS YQINMARELI  480
AEGTNAWILI SRNNQHVLWD NVVYEIEEHF MRISKCSSRS LTHQDFELLR RISGCYEYVT  540
QVNFEKMWCW LFPVAYSISR GLINGMWRSS SPKWIEGFIT KEEAEHSLQG QEPGTFILRF  600
PISRIWPHPD AGSLVVSYVG HDFALHHKQL KIDNMCESSE RYMDAKPLQD VLLAEPELSR  660
LGRIIRSH*
Cis-element ? help Back to Top
SourceLink
PlantRegMap477018
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2215320.0AK221532.1 Arabidopsis thaliana mRNA for Hypothetical protein, complete cds, clone: RAFL07-69-D06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890440.10.0uncharacterized protein LOC9325260
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLD7KVC10.0D7KVC1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__2148__AT1G78540.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]