PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476799
Common NameARALYDRAFT_476799
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 336aa    MW: 37892.6 Da    PI: 6.4162
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476799genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.31.4e-53221501129
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvgl 102
             lppGfrFhPtdeel+++yL+ k+ +  l+   +i+evd++++ePw+Lp+++k +ekewyf+s rd+ky+tg r+nrat++gyWkatgkdkev++  +g+lvg+
  476799  22 LPPGFRFHPTDEELITFYLASKIFHGGLSG-IHISEVDLNRCEPWELPEMAKMGEKEWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFAGgGGQLVGM 123
             79*************************999.78***************988999***************************************9978889*** PP

     NAM 103 kktLvfykgrapkgektdWvmheyrle 129
             kktLvfykgrap+g kt+Wvmheyrle
  476799 124 KKTLVFYKGRAPRGLKTKWVMHEYRLE 150
             *************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-6317171IPR003441NAC domain
PROSITE profilePS5100559.40522171IPR003441NAC domain
PfamPF023659.4E-2723149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MMLAVEDVLS ELAGEERNER GLPPGFRFHP TDEELITFYL ASKIFHGGLS GIHISEVDLN  60
RCEPWELPEM AKMGEKEWYF YSLRDRKYPT GLRTNRATTA GYWKATGKDK EVFAGGGGQL  120
VGMKKTLVFY KGRAPRGLKT KWVMHEYRLE TDHSHRHTCK EEWVICRVFN KTGDRKNVGI  180
NNQITYLHNH SLSATHHHHH EALPLLLEPS NKTLNNFPSL LYDDPHQIYN NNLLHGSSGH  240
NIDELKALIN PVVSQLNGII FSPGNNNNDE DDFDFNLGVK TEPSSNGGNN NELDVRDYLE  300
NPLFQEASYG LLGLSSSPGP LHMLLDSPCP LGFQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-512217120168NAC domain-containing protein 19
3swm_B9e-512217120168NAC domain-containing protein 19
3swm_C9e-512217120168NAC domain-containing protein 19
3swm_D9e-512217120168NAC domain-containing protein 19
3swp_A9e-512217120168NAC domain-containing protein 19
3swp_B9e-512217120168NAC domain-containing protein 19
3swp_C9e-512217120168NAC domain-containing protein 19
3swp_D9e-512217120168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap476799
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9712550.0AB971255.1 Rorippa aquatica RaCUC3 mRNA for cup-shaped cotlyedon 3, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889081.10.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8510.0NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLD7KTT10.0D7KTT1_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__1929__AT1G76420.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.10.0NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]