PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 476799 | ||||||||
Common Name | ARALYDRAFT_476799 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 336aa MW: 37892.6 Da PI: 6.4162 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.3 | 1.4e-53 | 22 | 150 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvgl 102 lppGfrFhPtdeel+++yL+ k+ + l+ +i+evd++++ePw+Lp+++k +ekewyf+s rd+ky+tg r+nrat++gyWkatgkdkev++ +g+lvg+ 476799 22 LPPGFRFHPTDEELITFYLASKIFHGGLSG-IHISEVDLNRCEPWELPEMAKMGEKEWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFAGgGGQLVGM 123 79*************************999.78***************988999***************************************9978889*** PP NAM 103 kktLvfykgrapkgektdWvmheyrle 129 kktLvfykgrap+g kt+Wvmheyrle 476799 124 KKTLVFYKGRAPRGLKTKWVMHEYRLE 150 *************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-63 | 17 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.405 | 22 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-27 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 336 aa Download sequence Send to blast |
MMLAVEDVLS ELAGEERNER GLPPGFRFHP TDEELITFYL ASKIFHGGLS GIHISEVDLN 60 RCEPWELPEM AKMGEKEWYF YSLRDRKYPT GLRTNRATTA GYWKATGKDK EVFAGGGGQL 120 VGMKKTLVFY KGRAPRGLKT KWVMHEYRLE TDHSHRHTCK EEWVICRVFN KTGDRKNVGI 180 NNQITYLHNH SLSATHHHHH EALPLLLEPS NKTLNNFPSL LYDDPHQIYN NNLLHGSSGH 240 NIDELKALIN PVVSQLNGII FSPGNNNNDE DDFDFNLGVK TEPSSNGGNN NELDVRDYLE 300 NPLFQEASYG LLGLSSSPGP LHMLLDSPCP LGFQL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 9e-51 | 22 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 9e-51 | 22 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 9e-51 | 22 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 9e-51 | 22 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 9e-51 | 22 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 9e-51 | 22 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 9e-51 | 22 | 171 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 9e-51 | 22 | 171 | 20 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 476799 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB971255 | 0.0 | AB971255.1 Rorippa aquatica RaCUC3 mRNA for cup-shaped cotlyedon 3, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002889081.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3 | ||||
Swissprot | Q9S851 | 0.0 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | D7KTT1 | 0.0 | D7KTT1_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.2__1929__AT1G76420.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76420.1 | 0.0 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 476799 |
Entrez Gene | 9323702 |
Publications ? help Back to Top | |||
---|---|---|---|
|