PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476788
Common NameARALYDRAFT_476788
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Nin-like
Protein Properties Length: 811aa    MW: 90699.9 Da    PI: 6.1259
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476788genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK93.71.3e-29546597152
  RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
             aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  476788 546 AEKNITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 597
             589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.097536617IPR003035RWP-RK domain
PfamPF020421.3E-25549597IPR003035RWP-RK domain
SuperFamilySSF542778.1E-23701800No hitNo description
PROSITE profilePS5174526.866712795IPR000270PB1 domain
SMARTSM006663.2E-24712795IPR000270PB1 domain
PfamPF005642.5E-17713793IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2403.0E-19713792No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MENSSLPMDP AMDSSFMDGL LLEGCWLETT DASEFLNFSP STSVTPFDPS SFMWSPTQDT  60
SNSLSQMYGQ DSAERSSLED QNQGRDLSSF NRRWWIGPSG HHGFSVMDRL VQAVTHIKDF  120
TSERGSLIQL WVPVDRGGKR VLTTKEQPFS HDPMCQRLAH YREISENYQF STEQEDSGSS  180
SRDLVGLPGR VFLGKVPEWT PDVRFFKNEE YPRVQHAQDC DVRGTLAIPV FEQGSQICLG  240
VIEVVMTTQM VKLSPDLESI CRALQAVDLR STEIPIPPSL KGPDFSYQAA LPEIRNLLRC  300
ACETHKLPLA QTWVSCLKQS KTGCRHNYEN YVHCVSTIDD ACYVGDPSVR EFHEACSEHH  360
LLKGQGVVGE AFLTNGPCFS SDVSSYKKSE YPLSHHATMF GLHGTVAIRL RCIHTGSADF  420
VLEFFLPKNC RDIEEQRKML NALSTIMAHV PRSLRTVTEK ELEEEGDSMV SEVIERGVTL  480
PKIENISEVP QSISTPQNVG IVFDGGTTEM GELGSDYGKG LSVNDNNTFS SGSGFNRVTE  540
KKRTKAEKNI TLDVLRQYFA GSLKDAAKSI GVCPTTLKRI CRQHGIQRWP SRKIKKVGHS  600
LQKIQRVIDS VEGVSGHHLP IGSFYASFPN LASSPEASSL QQQSKTTTFL PSSHSQHAKS  660
PGSSCSHSSS CSSEPQVNKE DPTDKTRQVS VSFKETQTTH LSPSTSSQED DFLRIKVSYE  720
EEKIRFRMRN SHRLKDLLWE IAKRFSIEDV SRYDLKYLDE DNEWVLLRCD DDVDECVDVC  780
RSFPGQTIKL LLQLSSSYLP ERSSVSGCPL *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap476788
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935370.0AB493537.1 Arabidopsis thaliana At1g76350 mRNA for hypothetical protein, partial cds, clone: RAAt1g76350.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889931.10.0protein NLP5
RefseqXP_020889932.10.0protein NLP5
RefseqXP_020889933.10.0protein NLP5
RefseqXP_020889934.10.0protein NLP5
SwissprotQ9SFW80.0NLP5_ARATH; Protein NLP5
TrEMBLD7KTC40.0D7KTC4_ARALL; RWP-RK domain-containing protein
STRINGfgenesh2_kg.2__1918__AT1G76350.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34612663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein