PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

476719

Common Name

ARALYDRAFT_476719

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 462aa MW: 49898.5 Da PI: 9.7379

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
476719	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.4e-05	208	230	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H 476719 208 ACSQCGEVFPKLESLELHQAVrH 230 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	207	230	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.808	207	235	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	7.96E-25	232	457	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.1E-15	234	457	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MALLTFLPEN AEAPQKHKPP SSKRKKRENP TDQTQPRKQK PHKPQKPKKE VPQKQPSSWD 60 QIKNLLTCKQ IEGSRVHDPS KNSQVGPSMT THLSPSKLGS SCSSICSFRD VAHGNTRVVH 120 RADHSPDVAN SVAPNSETRL LTRKPGQHGS SSSRSLTSGS TRSNASGSYT SSSTTSFRAM 180 QFRKLSGCYE CHMIVDPSRY PISPRVCACS QCGEVFPKLE SLELHQAVRH AVSELGPEDS 240 GRNIVEIIFK SSWLKKDSPI CQIERILKVQ NTQRTIQRFE DCRDAVKARA LQATRKDARC 300 AADGNELLRF HCTTLTCSLG ARGSSSLCSN LPGCGVCTVI RHGFQGKSGG GAATATANGS 360 GVRTTASSGR ADDLLRCSDD ARRVMLVCRV IAGRVKRVDL PAAEAPSPVE DNSAVGVSTS 420 GGTFDSVAVN AGVYSNLEEL VVYNPRAILP CFVVIYKVLE S*

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MALLTFLPEN AEAPQKHKPP SSKRKKRENP TDQTQPRKQK PHKPQKPKKE VPQKQPSSWD  60
QIKNLLTCKQ IEGSRVHDPS KNSQVGPSMT THLSPSKLGS SCSSICSFRD VAHGNTRVVH  120
RADHSPDVAN SVAPNSETRL LTRKPGQHGS SSSRSLTSGS TRSNASGSYT SSSTTSFRAM  180
QFRKLSGCYE CHMIVDPSRY PISPRVCACS QCGEVFPKLE SLELHQAVRH AVSELGPEDS  240
GRNIVEIIFK SSWLKKDSPI CQIERILKVQ NTQRTIQRFE DCRDAVKARA LQATRKDARC  300
AADGNELLRF HCTTLTCSLG ARGSSSLCSN LPGCGVCTVI RHGFQGKSGG GAATATANGS  360
GVRTTASSGR ADDLLRCSDD ARRVMLVCRV IAGRVKRVDL PAAEAPSPVE DNSAVGVSTS  420
GGTFDSVAVN AGVYSNLEEL VVYNPRAILP CFVVIYKVLE S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	476719

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352975	0.0	AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002887608.1	0.0	uncharacterized protein LOC9323672
TrEMBL	D7KT60	0.0	D7KT60_ARALL; Zinc finger family protein
STRING	fgenesh2_kg.2__1849__AT1G75710.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	0.0	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	476719
Entrez Gene	9323672