PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 476550 | ||||||||
Common Name | ARALYDRAFT_476550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 328aa MW: 36948.7 Da PI: 6.5107 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +v+++G g W+t + + g++R++k+c++rw +yl 476550 14 KGAWTQEEDQKLIAYVQRHGEGGWRTLPDKAGLKRCGKSCRLRWANYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eE++ ++++++ +G++ W++Iar+++ +Rt++++k++w+++ 476550 67 RGEFSQEEEDSIINLHATHGNK-WSAIARKLP-RRTDNEIKNHWNTH 111 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.372 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.48E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.671 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.19E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009625 | Biological Process | response to insect | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MVRTPCCRAE GLKKGAWTQE EDQKLIAYVQ RHGEGGWRTL PDKAGLKRCG KSCRLRWANY 60 LRPDIKRGEF SQEEEDSIIN LHATHGNKWS AIARKLPRRT DNEIKNHWNT HIKKRLVKKG 120 IDPLTHKFLH DGASKSSDYP ETPHPEKSSV RHEEDDQNSN NKKSSGSSSA RFLNRVANRF 180 GHRINHNVLS NIIGSSSLLT SHTTPTTSVS ECERSNSSSS TPTSSNLPMY QSITVDATSL 240 SSSTFSDSSD PFLYDDIFGD IEDMTRFSSR CLSDVLSHDD EEFLMSDEEL AMIFREDKTE 300 TTSFNDSHAK LINEVDDSFE GIDNYIG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in glucosinolates biosynthesis. {ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 476550 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493533 | 0.0 | AB493533.1 Arabidopsis thaliana At1g74080 mRNA for hypothetical protein, partial cds, clone: RAAt1g74080. | |||
GenBank | AF371983 | 0.0 | AF371983.2 Arabidopsis thaliana putative transcription factor MYB122 (MYB122) mRNA, complete cds. | |||
GenBank | BT028931 | 0.0 | BT028931.1 Arabidopsis thaliana At1g74080 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020890176.1 | 0.0 | LOW QUALITY PROTEIN: transcription factor MYB122 | ||||
Swissprot | Q9C9C8 | 0.0 | MY122_ARATH; Transcription factor MYB122 | ||||
TrEMBL | D7KRY9 | 0.0 | D7KRY9_ARALL; MYB122 | ||||
STRING | fgenesh2_kg.2__1680__AT1G74080.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74080.1 | 1e-157 | myb domain protein 122 |
Link Out ? help Back to Top | |
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Phytozome | 476550 |
Entrez Gene | 9325027 |