PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476400
Common NameARALYDRAFT_476400
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 627aa    MW: 69763.3 Da    PI: 5.2212
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476400genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-09543591348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g W+ I ++       Rt  ++k++w+++l
           476400 543 AWTLSEVTKLVEGVSKYGAGKWSEIKKHSFssySYRTSVDLKDKWRNLL 591
                      7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.123536595IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-14538597IPR009057Homeodomain-like
SMARTSM007171.9E-10540593IPR001005SANT/Myb domain
SuperFamilySSF466892.39E-16542601IPR009057Homeodomain-like
CDDcd116608.33E-21542592No hitNo description
PfamPF002492.7E-7543591IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MGTVVGTVED RRDMFEGSAQ TRITPFSSTN QIGNPVAYKL VRVSGDGSLV PATDEEILEV  60
NETDMHIASD ACQTVGYLAT DEENSEINET VMHIASDAWQ TVGYLPAEGI PSRLSQLESS  120
EGINSGLLQS DSVQPYTDQV KSPPEYNEKM LQKVEQEERL GNIHGSQMPS TPRDANIQCS  180
DENNFFEEDQ VHHEDLLQNE CNMNQSDKIE PCSNAAASPK ETALSGAAQK PDFSRVRGEI  240
CLDNLPIKAL QETFRATFGR ETTVKDKTWL KRRIAMGLIN SCDVPATNLR VKDKMLVGNQ  300
EKTNDVTNAI SKDMGDDVRA TKMKDAPSST DHVNGHSNGG DHYYASEDYS SEQRAAKRVR  360
KPTRRYIEEL SETDEKQQND KSMIPSKDQK LSEKSEVRSI SVSSGKRVTV TRMVSLAGSE  420
IEVPYVSHVR RSRPRENIMA LMGCHSSYLE DKASATESNL NLSPSQLSSE VVNRDLVEKS  480
ASRLVQKEFA TSEENNEEHI LSEVDQDMEP EHIDSSGNSS DDNNNIGVPI MQGGALRRKH  540
HRAWTLSEVT KLVEGVSKYG AGKWSEIKKH SFSSYSYRTS VDLKDKWRNL LKSSFAQSPS  600
NSVGNLKKHG SMHIPTQILL RVRELAE
Cis-element ? help Back to Top
SourceLink
PlantRegMap476400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0456280.0AY045628.1 Arabidopsis thaliana At1g72650/F28P22_16 mRNA, complete cds.
GenBankAY0845300.0AY084530.1 Arabidopsis thaliana clone 110945 mRNA, complete sequence.
GenBankAY1248680.0AY124868.1 Arabidopsis thaliana At1g72650/F28P22_16 mRNA, complete cds.
GenBankAY5195400.0AY519540.1 Arabidopsis thaliana MYB transcription factor (At1g72650) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865947.10.0uncharacterized protein LOC9323508 isoform X2
TrEMBLD7KR240.0D7KR24_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.2__1530__AT1G72650.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.20.0TRF-like 6