PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 476336 | ||||||||
Common Name | ARALYDRAFT_476336 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 393aa MW: 44549.9 Da PI: 7.7737 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.001 | 20 | 42 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg s s k++ ++Hi++H 476336 20 YLCQYCGISRSKKYLITSHIQSH 42 56********************6 PP | |||||||
2 | zf-C2H2 | 20.2 | 1.6e-06 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F+ + +Lk+H+++H 476336 66 HTCQECGAEFKKPAHLKQHMQSH 88 79*******************99 PP | |||||||
3 | zf-C2H2 | 16.1 | 3.2e-05 | 94 | 118 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + C dC +s++rk++L+rH+ tH 476336 94 FACYvdDCATSYRRKDHLNRHLLTH 118 668888*****************99 PP | |||||||
4 | zf-C2H2 | 22.3 | 3.5e-07 | 196 | 219 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +C+ Cgk F+ +s+L++H+ +H 476336 196 VCKeiGCGKAFKYPSQLQKHQDSH 219 79999****************998 PP | |||||||
5 | zf-C2H2 | 17.9 | 8.5e-06 | 285 | 310 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC+ C+ +Fs snL++H + H 476336 285 FKCEveGCSSTFSKASNLQKHVKAvH 310 89*******************99877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 18 | 20 | 42 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.5E-5 | 65 | 85 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 14.004 | 66 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0015 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.87E-10 | 79 | 120 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.1E-13 | 86 | 120 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.889 | 94 | 123 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.34 | 94 | 118 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 96 | 118 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.307 | 123 | 153 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.3 | 123 | 148 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 125 | 148 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.73E-5 | 190 | 221 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-6 | 190 | 219 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.72 | 195 | 224 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0028 | 195 | 219 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 197 | 219 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.97 | 227 | 252 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.3E-4 | 229 | 250 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 229 | 252 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 22 | 255 | 276 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.35E-8 | 266 | 320 | No hit | No description |
PROSITE profile | PS50157 | 12.965 | 285 | 315 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.8E-4 | 285 | 310 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.7E-8 | 285 | 310 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 287 | 310 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.5E-5 | 311 | 336 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 8.1 | 316 | 342 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 318 | 342 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 393 aa Download sequence Send to blast |
MAEEAKKDVK TSAKKDIRNY LCQYCGISRS KKYLITSHIQ SHHQMELEEE RDDEDCEVEE 60 EFSSKHTCQE CGAEFKKPAH LKQHMQSHSL ERPFACYVDD CATSYRRKDH LNRHLLTHKG 120 KLFKCPKENC KSEFSVQGNV SRHVKKCHSS GDSDKDTTGK GDSDKENAGN GDSGKDNTGN 180 GDSQPSECST GQKKLVCKEI GCGKAFKYPS QLQKHQDSHV KLDSVEAFCS EPGCMKYFTN 240 EECLKAHIRS CHQHINCEIC GSKHLKKNIK RHLRTHDEDS SPGEFKCEVE GCSSTFSKAS 300 NLQKHVKAVH EDLRPFVCGF PGCGMRFAYK HVRNNHENSG CHVYTCGDFV ETDEDFTSRP 360 RGGLKRKQVT AEMLVRKRVM PPRFDSEEHE TC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wjq_D | 1e-15 | 18 | 336 | 7 | 275 | Zinc finger protein 568 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 476336 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ630478 | 0.0 | AJ630478.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g72050D. | |||
GenBank | AY054225 | 0.0 | AY054225.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds. | |||
GenBank | AY066042 | 0.0 | AY066042.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds. | |||
GenBank | AY186610 | 0.0 | AY186610.1 Arabidopsis thaliana transcription factor IIIA (TFIIIA) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020891257.1 | 0.0 | transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 0.0 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | D7KZ91 | 0.0 | D7KZ91_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.2__1466__AT1G72050.2 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4714 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72050.2 | 0.0 | transcription factor IIIA |
Link Out ? help Back to Top | |
---|---|
Phytozome | 476336 |
Entrez Gene | 9324921 |