PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476276
Common NameARALYDRAFT_476276
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 184aa    MW: 20255.5 Da    PI: 5.3057
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476276genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-172372255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
             y+GVr +k +g+Wv+eIr+p +   + r++lg+f t+e+Aa a++ a+  ++g
  476276 23 AYRGVRKRK-WGKWVSEIREPGT---KNRIWLGSFETPEMAATAYDVAAFHFRG 72
            69****999.**********833...59*********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.96E-322282No hitNo description
SuperFamilySSF541711.9E-222281IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-322381IPR001471AP2/ERF domain
SMARTSM003803.9E-382386IPR001471AP2/ERF domain
PfamPF008475.3E-112372IPR001471AP2/ERF domain
PROSITE profilePS5103223.632380IPR001471AP2/ERF domain
PRINTSPR003678.0E-132435IPR001471AP2/ERF domain
PRINTSPR003678.0E-136282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAGLRNSSNS DKAQNDGKGV PSAYRGVRKR KWGKWVSEIR EPGTKNRIWL GSFETPEMAA  60
TAYDVAAFHF RGREARLNFP ELASSLPRPA DSSSDSIRMA VQEATLCRTT EGSESAMQVN  120
SSSSSTVVPT MVRLSPTEIQ AINESTLGSP TTLMHSTYDS MVFANDMEMN AWETYQSDFL  180
WDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-172480663ATERF1
3gcc_A4e-172480663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap476276
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161620.0AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0161630.0AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence.
GenBankBT0107640.0BT010764.1 Arabidopsis thaliana At1g71450 gene, complete cds.
GenBankBT0117900.0BT011790.1 Arabidopsis thaliana At1g71450 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891629.11e-134ethylene-responsive transcription factor ERF021
SwissprotQ9C9I21e-127ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLD7KYV81e-133D7KYV8_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__1406__AT1G71450.11e-134(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-126ERF family protein