PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476175
Common NameARALYDRAFT_476175
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 311aa    MW: 35561.9 Da    PI: 4.6901
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476175genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.72e-082532872155
               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
               k +yp++ ++  LA ++gL+++q+ +WF N+R ++
    476175 253 KWPYPTEGDKIALAGETGLNQKQINNWFINQRKRH 287
               569*****************************885 PP
2ELK33.77.9e-12207228122
     ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
             +LK+qLlrK++++++sLk EFs
  476175 207 DLKDQLLRKFGSHISSLKLEFS 228
             6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.0E-2166110IPR005540KNOX1
PfamPF037902.2E-2068109IPR005540KNOX1
SMARTSM012561.5E-27117168IPR005541KNOX2
PfamPF037916.8E-25121167IPR005541KNOX2
PfamPF037897.2E-9207228IPR005539ELK domain
SMARTSM011884.2E-6207228IPR005539ELK domain
PROSITE profilePS512139.935207227IPR005539ELK domain
PROSITE profilePS5007112.212227290IPR001356Homeobox domain
SuperFamilySSF466899.41E-19228299IPR009057Homeodomain-like
SMARTSM003896.5E-12229294IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-27232291IPR009057Homeodomain-like
CDDcd000869.26E-11236291No hitNo description
PfamPF059203.6E-17247286IPR008422Homeobox KN domain
PROSITE patternPS000270265288IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0010094Biological Processspecification of carpel identity
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDRMCGFRST EEYSEQATLM LPSDYQSLIC SSTGDNRVFG SDELATALSS EAPPRIRKAD  60
DNFSLSVIKS KIACHPLYPR LLQTYIDCQK VGAPMEIACI LEEIQQENHV YKRDVAPLSC  120
FGDDPELDEF METYCDILVK YKTDLARPFD EAATFINKIE MQLQNLCTGP ASATALSDDG  180
ALSSDEELRE DDHVTAQDSQ QRSNDRDLKD QLLRKFGSHI SSLKLEFSKK KKKGKLPREA  240
RQALFDWWNV HYKWPYPTEG DKIALAGETG LNQKQINNWF INQRKRHWKP SENMPFDMMD  300
DSNETFLTEE *
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMap476175
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX813530.0X81353.1 A.thaliana mRNA for ATK1 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889993.10.0homeobox protein knotted-1-like 2
SwissprotP466400.0KNAT2_ARATH; Homeobox protein knotted-1-like 2
TrEMBLD7KY360.0D7KY36_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__1305__AT1G70510.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.10.0KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhang XL,Yang ZP,Zhang J,Zhang LG
    Ectopic expression of BraYAB1-702, a member of YABBY gene family in Chinese cabbage, causes leaf curling, inhibition of development of shoot apical meristem and flowering stage delaying in Arabidopsis thaliana.
    Int J Mol Sci, 2013. 14(7): p. 14872-91
    [PMID:23863694]
  3. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  4. Scofield S,Dewitte W,Murray JA
    STM sustains stem cell function in the Arabidopsis shoot apical meristem and controls KNOX gene expression independently of the transcriptional repressor AS1.
    Plant Signal Behav, 2018.
    [PMID:24776954]
  5. Lee JE,Lampugnani ER,Bacic A,Golz JF
    SEUSS and SEUSS-LIKE 2 coordinate auxin distribution and KNOXI activity during embryogenesis.
    Plant J., 2014. 80(1): p. 122-35
    [PMID:25060324]
  6. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  7. Li Z, et al.
    Transcription factors AS1 and AS2 interact with LHP1 to repress KNOX genes in Arabidopsis.
    J Integr Plant Biol, 2016. 58(12): p. 959-970
    [PMID:27273574]
  8. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]